Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq287 91.5 8e-14 seq20 87.8 9e-13 seq3 86.0 3e-12 seq53 84.2 1e-11 >seq287 Length=650225 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | ||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 245932 AAAAAAAAAACCATTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 245873 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 245872 CACGCTCTAACCAACTGAGCTAACCGGCC 245844 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| | ||||||| | |||||||||| ||||||| |||||||||||| Sbjct 235192 TAATAAAAAACGA--TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 235135 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 235134 CCACGCTCTAACCAACTGAGCTAACCGGCC 235105 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| |||| ||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 265568 AAGAAAATATCAG-TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 265626 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 265627 CACGCTCTAACCAACTGAGCTAACCGGCC 265655 >seq20 Length=4710625 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3985476 GGATCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACTGG 3985417 Query 11528 CC 11529 || Sbjct 3985416 CC 3985415 >seq3 Length=204416410 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 175023147 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 175023206 Query 11528 CCGTCG 11533 ||| || Sbjct 175023207 CCGCCG 175023212 >seq53 Length=2396296 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 1810713 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 1810772 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1810773 CTGAGCTAACCGGCC 1810787 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261470622031732