Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq24 138 2e-27 seq1614 134 2e-26 >seq24 Length=4717188 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || || ||||| || |||||||| | || ||||| || | | Sbjct 2267318 CAAAGCCTACTTTGCCCCCAAAAGTGCTTGGCTTCCAGTACTCAGGAGAGCAAATTGCAT 2267259 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||||||| ||||| ||||| ||||| || || || || | ||| ||||||| |||| Sbjct 2267258 TTCCCATGAGTCCTTTCAGGGAGAACGGTGCTCCAAGTTCAATCATGGTCTCACCAAAGA 2267199 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| ||||| || ||||| || || | | | |||| ||||| || ||||||| Sbjct 2267198 TGGCTCCAGGACGTGGTTTTTCTACTAAAAGAGCTGGATACAGCTCCATCGCATCGATGT 2267139 Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 |||| ||||| | ||||||| ||||| ||||| || |||||||| Sbjct 2267138 CTCCATAAAGCTCTTTGAGTTCAGCAGCCATTTCTTTCTCTCCTGT 2267093 Score = 123 bits (136), Expect = 4e-23 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || | ||| || | || || || ||||| ||||| || ||||||||| || || Sbjct 2264374 CCTATCAAGATCAGCCTGGTTGTTTGGAACAGCTGTTCATCGTCCCATTCTGGGTGCTCC 2264315 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | ||| ||||| || ||||| | ||||||||||| ||||| | || || |||||||| Sbjct 2264314 CCTTTAAGAACGTCACACACCCGGTTGTGTTCCCGTAGCCACAATGTCGCATACATCATC 2264255 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || || || |||| ||||| ||||||| || ||| | | || | || || | Sbjct 2264254 AGTCCTGGAACCAAACCAAAGACCTCTTGCCCTACACAAAATCTCAAGTGCTCAGGGATA 2264195 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCG 9852 | ||| ||||||||||| | |||| ||||| || | ||| ||||||||||| || Sbjct 2264194 TGGGGTGGATAGATCATTTCTGCCTGAGTGTCTTTCACTGTGGGTGGATACATTTCTCCA 2264135 Query 9853 TCAATAATCTG 9863 || || ||||| Sbjct 2264134 TCGATCATCTG 2264124 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/267 (69%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 9321 ACTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGT 9380 |||||| | ||||||||||| || | ||| |||| ||| | || | || ||| ||| Sbjct 2265123 ACTTACCCTTCCAGCTATTTGCTTGGAGAAAGATTGTACCATGTGAGAAAGGCCATGGTC 2265064 Query 9381 CATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATC 9438 || | |||||||||||||| || || | | || ||| ||| | | | | ||| Sbjct 2265063 CAGCATAATGGAATTGTTGTAGACAAACTGCTGAT-AAGT-ATATTCTTGGTCCTGAATG 2265006 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | ||| |||| |||| ||||||||| || | |||| ||||||| ||| Sbjct 2265005 TTAAAAGTATCAGGCAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCGGCTGCTATT 2264946 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 | || || |||||||| || | ||||||||| || || | |||| || || || Sbjct 2264945 CTGTTCTGATACTGGAATCGTTG-GTTAAAGAGCAGCTCTGGATCAAACTTCAGCTTGAA 2264887 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 ||| ||||| || | ||||| ||||| Sbjct 2264886 GTGATAGCCACTTAAATGCTGTACATA 2264860 >seq1614 Length=25508 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || ||||||||||||||||| |||||||| | |||||||||||| |||| ||| ||| Sbjct 6309 TCCCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGG 6368 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 || || ||||| || || ||||| | ||| | |||||||| || |||||||| || Sbjct 6369 CCCTTCAGGGAGAAGGGCGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCCCGCGGC 6428 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 | | ||| ||||||| | || | ||| |||||||| || |||||||| ||||| || Sbjct 6429 TGCGCCTTCTCCACCAGCATCCCCGGGTAGAACTCCACTGCGTCGATGTCGCCGTACAG 6487 Score = 89.7 bits (98), Expect = 7e-13 Identities = 170/247 (69%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| | | |||||| || || || ||||| ||| | || || Sbjct 9097 TCACCAATGAGGATGAGCCTGGCGGTCTGGAAGAGCTGCTCGTCGTCCCAGGCGGGGTG- 9155 Query 9670 TCTCGT--TTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACA 9727 ||||| || || | || || | |||||| || | |||||||| || ||| ||| Sbjct 9156 -CTCGTCCTTGAGGAGGGCGGCGACCCGGTTGTGCTCGCGCAGCCAGATGGTGGCGAACA 9214 Query 9728 TCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGG 9787 ||||||| || || | ||||||||| |||| || || || ||||| || | ||| Sbjct 9215 TCATGAGTCCCGGGAGCAGGCCAAAGACCTCCTGCCCCACCGCCAGGCGGGCCT---CGG 9271 Query 9788 GC---ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || || | | || ||||||||||||||| || | || | |||||||| || |||| Sbjct 9272 GCGGGACGTGCGCCGGGTAGATCATGTGCACCGGGGCCTCCTCCACCGAGGGCGGGTACA 9331 Query 9845 TTTCACC 9851 | || || Sbjct 9332 TCTCCCC 9338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708467613192080