Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3801 147 2e-30 seq6 87.8 2e-12 >seq3801 Length=8881 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||| |||| || | ||| | ||| |||||||| || | ||||||||| | Sbjct 4131 CCTCCCCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGAC 4190 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || ||| | || || || ||||||||||||||||| Sbjct 4191 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGG 4250 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || |||||||| | ||||| ||||| || | | |||||| | ||| || || Sbjct 4251 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATGGTGTCA-CTTGGTTCCAC 4309 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||||||||||||||||| Sbjct 4310 TTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGC 4359 Score = 132 bits (146), Expect = 4e-26 Identities = 156/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| ||||| || || | || || ||| | |||| | ||| || | Sbjct 3922 CAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAA 3981 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| | || || ||||| ||||| ||||||||||| ||||||||||| | | Sbjct 3982 GCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGA 4041 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| ||||||||| | | |||||| | ||||| || | ||||||||||||| Sbjct 4042 TTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTC 4101 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| | ||||| |||||||||||||||| Sbjct 4102 CAGTCAAGGTTTTGACAAAGATCTGCATGC 4131 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| ||||| | ||| ||||| || || | ||| || ||| || ||| | ||| || Sbjct 4376 CACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 4435 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| ||| |||| || ||||| || || ||||| || || || |||||||| | Sbjct 4436 AAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCTTG 4495 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGTTT 94976 |||||||| || || | | ||||| || |||| | || || | |||||||||| Sbjct 4496 GATTTTTGCTTTCACATTCTCAATGGTGTC-GCTTGGTTCCACTTCGAGAGTGATGGTTT 4554 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||| || || ||||||||||| ||||||| Sbjct 4555 TTCCAGTCAGGGTCTTCACAAAGATTTGCATGC 4587 Score = 125 bits (138), Expect = 6e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| ||||| |||| ||| | ||| | || || || || || | Sbjct 5030 AAAAATCTGCATGCCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGAT 5089 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||||||| || ||| | ||| || || || || ||| | || || || || || Sbjct 5090 GTTATAATCTGACAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTG 5149 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||| || || || |||||||| | || || ||||||||| | | |||||| Sbjct 5150 CTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTC 5209 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | || |||||||| ||||| || || ||||||||||||||||| Sbjct 5210 ACTGGGTTCCACCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Query 95008 GC 95009 || Sbjct 5270 GC 5271 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||| |||| ||| | ||| | ||| || || || || | ||| || ||| Sbjct 5499 CCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 5558 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || |||||||| ||| | ||||| || || ||||| ||||| || Sbjct 5559 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5618 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || || |||||||| | || || |||||||| | | |||||| | ||| || || Sbjct 5619 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCA-CTTGGCTCCAC 5677 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | || ||||||||||||||||| Sbjct 5678 CTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5725 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| ||| | || | ||| || || || || | ||| ||||| Sbjct 5271 CCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAG 5330 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || |||||||| ||| | ||||| || || ||||| ||||| || Sbjct 5331 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5390 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||||||||| | || || ||||||||| | | |||||| || ||| || || Sbjct 5391 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTC-GCTTGGTTCAAC 5449 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | |||||||| || |||||||| Sbjct 5450 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | || || | ||||||||||||||||| || |||||||| Sbjct 4658 ATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTT 4717 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||||||| | | |||||| | | || || || | ||||| Sbjct 4718 GTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGAT 4777 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||||||||| | || ||||| || |||||||||| Sbjct 4778 GGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATGC 4815 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| ||| ||||| | || ||||| || || | || || ||| Sbjct 4815 CCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAG 4874 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || ||||| || ||| | || || || |||||||||||||| || Sbjct 4875 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGG 4934 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||||||||| | || || ||||||||| | | |||||| | ||| || || Sbjct 4935 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCA-CTTGGTTCCAC 4993 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | ||||| ||||| |||||||||| Sbjct 4994 CTCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCATGC 5043 >seq6 Length=80741955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| | || ||||||| | | | ||| | ||||| || ||||||||| Sbjct 46145091 TCCTCCAGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTG 46145150 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| | ||||| | | || |||||| | | || ||||| | ||| | Sbjct 46145151 TCCTGGATTTTGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTT 46145210 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || || || |||||||||||||||||| Sbjct 46145211 GTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 46145246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255017296520