Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq100 174 2e-39 seq287 168 1e-37 seq221 167 4e-37 seq73 118 2e-22 >seq100 Length=1796689 Score = 174 bits (192), Expect = 2e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| || ||||| || |||||||| |||||| Sbjct 558311 CTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGCCGTGGT 558252 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| | || || ||| |||||||||| | || | || |||||| |||| Sbjct 558251 GGAGTGAAGCGCATTTCGGGCTTGATCTATGAAGAAACCCGCGGCGTGTTGAAGGTCTTT 558192 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||||| || || || |||||||| || | ||||||||| Sbjct 558191 CTGGAGAATGTGATCCGCGATGCGGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 558132 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| |||| || || |||| || || ||||| | | |||||||||||| Sbjct 558131 ACCGCCATGGACGTCGTTTACGCCCTGAAGCGCCAGGGCCGCACTCTGTATGGTTTTGGA 558072 Query 16694 AGTTAA 16699 | ||| Sbjct 558071 GGCTAA 558066 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | || |||| | || || |||||||||||||| ||||| ||||| || ||| Sbjct 548136 GCCAAGAGGCACCGCAAAGTCCTCCGGGATAACATCCAAGGCATCACAAAGCCGGCCATC 548195 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||| || || || ||||| ||| | || || ||| ||||||| || | | Sbjct 548196 CGTCGCTTGGCTCGCCGCGGAGGCGTCAAACGTATTTCGGGCTTGATCTATGAGGAAACT 548255 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| ||||| | ||| ||| |||| |||||| | || || || Sbjct 548256 CGGGGCGTGTTGAAGGTCTTCTTGGAGAACGTGATCCGAGATGCTGTGACTTACACTGAA 548315 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| |||||| |||||||| | |||||||| |||| || || ||| Sbjct 548316 CATGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTGAAGCGCCAGGGC 548375 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 || | | ||||| |||||| Sbjct 548376 CGCACTCTGTATGGCTTTGGA 548396 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | || |||| | || || |||||||||||||| |||||||||||||| || Sbjct 544970 GCCAAGAGGCACCGCAAAGTCCTCCGGGATAACATCCAAGGCATCACCAAGCCAGCCATT 545029 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| || || || ||||||||| | || || ||| |||| || || | Sbjct 545030 CGCCGCTTGGCTCGCCGCGGAGGTGTCAAGCGTATTTCGGGCTTGATCTACGAGGAAACC 545089 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| || |||| |||||| | || ||||| Sbjct 545090 CGGGGCGTCCTGAAGGTCTTCCTGGAGAATGTGATCCGCGATGCTGTGACTTACACCGAA 545149 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| |||||||| | |||||||| |||| || || ||| Sbjct 545150 CACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTGAAGCGCCAGGGC 545209 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 545210 CGCACTCTGTACGGATTTGG 545229 >seq287 Length=650225 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | || |||| | ||||| || |||||||| || ||||||||||| || || Sbjct 317564 CGCCAAGAGGCACCGCAAAGTCCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 317505 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| ||||| || |||||||| | || ||| || ||||||| || | Sbjct 317504 TCGCCGCCTGGCTCGCCGTGGGGGCGTCAAGCGCATTTCGGGACTGATCTATGAGGAAAC 317445 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||||| | || ||||| Sbjct 317444 CCGGGGCGTCCTGAAGGTCTTCCTGGAGAACGTGATCCGCGATGCCGTGACTTACACCGA 317385 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | |||||||| ||||||| ||||| Sbjct 317384 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTGAAACGGCAAGG 317325 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | |||| || || || Sbjct 317324 CCGCACTCTTTACGGCTTCGG 317304 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | || |||| | ||||| || |||||||| || ||||||||||| || || Sbjct 310911 CGCCAAGAGGCACCGCAAAGTCCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 310852 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| ||||| || |||||||| | || || || ||||||| || | Sbjct 310851 TCGCCGCCTGGCTCGCCGTGGGGGCGTCAAGCGCATTTCGGGGCTGATCTATGAGGAAAC 310792 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||||| | || ||||| Sbjct 310791 CCGGGGCGTCCTGAAGGTCTTCCTGGAGAACGTGATCCGCGATGCCGTGACTTACACCGA 310732 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| |||||||| | |||||||| ||||||| ||||| Sbjct 310731 ACACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTGAAACGGCAAGG 310672 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| |||| || || || Sbjct 310671 ACGTACTCTTTACGGCTTCGG 310651 >seq221 Length=1009300 Score = 167 bits (184), Expect = 4e-37 Identities = 188/252 (75%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || || || || || ||||| ||||| Sbjct 340591 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGCCTCGCTCGCCGTGGA 340650 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || || || ||||||| || | || | ||| ||||| ||||| Sbjct 340651 GGTGTCAAGCGCATTTCGGGGCTGATCTATGAGGAAACCCGGGGTGTCCTGAAGGTCTTC 340710 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||||| | || ||||||||||| || | ||||||||| Sbjct 340711 CTGGAGAACGTGATCCGCGATGCCGTGACTTACACCGAGCACGCCAAGAGGAAGACTGTC 340770 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| | |||||||| |||| || || ||||| | |||| || || || Sbjct 340771 ACCGCCATGGATGTGGTCTATGCCCTGAAGCGCCAGGGCCGCACTCTTTACGGCTTCGGC 340830 Query 16694 AGTTAATCTTCT 16705 ||||| |||| Sbjct 340831 GGTTAAAATTCT 340842 Score = 156 bits (172), Expect = 7e-34 Identities = 185/251 (74%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || || ||||| || ||||||||||| || || || || || ||||||||||| Sbjct 415988 CTTCGGGACAATATCCAGGGCATCACCAAGCCCGCCATTCGCCGCCTTGCTCGTCGTGGA 415929 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || || | |||||||||| | || | || |||||| | ||| Sbjct 415928 GGCGTCAAGCGCATTTCGGGGCTCATCTATGAAGAAACCCGGGGCGTCTTGAAGGTTTTC 415869 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||||| | || ||||||||||| || | ||||||||| Sbjct 415868 CTGGAGAATGTGATCCGCGATGCCGTAACTTACACCGAGCACGCCAAGAGGAAGACTGTC 415809 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| | ||||| || |||| || || ||||| | |||| || |||||| Sbjct 415808 ACCGCCATGGATGTGGTCTACGCCCTGAAGCGCCAGGGCCGCACTCTTTACGGCTTTGGA 415749 Query 16694 AGTTAATCTTC 16704 | |||| ||| Sbjct 415748 GGCTAATTTTC 415738 >seq73 Length=2013901 Score = 118 bits (130), Expect = 2e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 1832128 CTCCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGCTCGCCGCGGG 1832187 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || ||||| ||||| Sbjct 1832188 GGCGTGAAGCGCATCTCGGGCCTGATCTACGAGGAGACGCGCGGCGTGCTGAAGGTCTTC 1832247 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || | ||| || |||||||| || | ||||| || Sbjct 1832248 CTGGAGAACGTGATCCGTGACGCCGTGACCTACACGGAGCACGCCAAGAGGAAGACGGTG 1832307 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || ||||||| | ||||| || Sbjct 1832308 ACTGCCATGGACGTGGTCTACGC 1832330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069296319701