Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq514 96.9 4e-15 seq4 86.0 8e-12 >seq1 Length=263920458 Score = 138 bits (152), Expect = 1e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| ||||| || |||||||| ||||| || || ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||||||||| || || || || || ||||||||||||||||||||||||||||||| Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 33446 C 33446 | Sbjct 148006131 C 148006131 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || ||||| || ||||| ||||| || ||||||||||| ||| Sbjct 148002242 GACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCT 148002301 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| ||| ||||| |||||||| ||||||||||| Sbjct 148002302 TCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 Score = 82.4 bits (90), Expect = 1e-10 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||| | |||||||| || | | ||| |||||||||||||| |||||||| ||||| Sbjct 148009348 TCTTTGATGTAAGTATCAATAAGTAAACTGTACATTTCCGAATGGATGTTTTCCATGGCA 148009407 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || || |||||||| | ||| || || | || | |||| | ||||| ||| Sbjct 148009408 ATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGACTTGGATTTCTTGGCTGAATCGCTCC 148009467 Query 33685 GCC 33687 || Sbjct 148009468 ACC 148009470 >seq514 Length=269024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 63943 CCTCCA-TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 64001 |||||| |||| |||| || | ||| || || |||||||| || || || ||||| || Sbjct 165391 CCTCCACTCAC--CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATC 165334 Query 64002 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 64061 |||||||| || |||||||| || || || | || || ||||| || | || || Sbjct 165333 CTGGCGGCAAGGATGGCATAGTCGGGGTGCTTAGTGGTCAGGGTGGCGGCAGTCTCAGCA 165274 Query 64062 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||||||||||| ||| || || || || ||| | || | || || || || ||||| Sbjct 165273 GCCAGAGTGTCCAGTTCCACAGTGGTGACACCACTGTAGAGGCCCTGGATCACTTTCAT 165215 >seq4 Length=156502444 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33337 CTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 33396 ||||| ||||| ||||| || ||||| || ||||| || || | || || |||||||| Sbjct 14021228 CTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCTTGAGCCAAAAG 14021169 Query 33397 ATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33456 || | || || | ||||| |||||||||||||| || | ||||| |||| | |||| Sbjct 14021168 ATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAGCAACCACTCTC 14021109 Query 33457 TCTCC 33461 || || Sbjct 14021108 TCCCC 14021104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622896920374120