Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3801 116 4e-21 >seq3801 Length=8881 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||||||| | ||||| ||||| | || | | Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct 4753 GACACCATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCAG 4694 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||||| || ||| || || || ||||||| | | | | ||||| || Sbjct 4693 CAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAAT 4634 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || |||| || |||||||| || || ||||| Sbjct 4633 ATCCAGAAAGAGTCAACCCTCCACCTTGTCCTGAGGCTCAGGGGAGG 4587 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || ||||||||| | ||||| ||||| | || | | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 4069 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 4010 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | |||| || ||| || || || ||||||| | | || |||||| || Sbjct 4009 CAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAT 3950 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| ||| ||||||| || || Sbjct 3949 ATCCAGAAAGAATCCACTCTCCATCTTGTACT 3918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || ||||| || | |||||| | || | ||| ||| | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| ||||||||||| || || || || || Sbjct 5437 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 5378 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||||||||| || ||||||| | | || || || ||| Sbjct 5377 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAAC 5318 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| ||||||| || ||| | || || ||||| Sbjct 5317 ATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCTCAGGGGAGG 5271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || || | ||||| | || | ||| ||| Sbjct 5041 ATGCAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAGT 4982 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 4981 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 4922 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | |||| || ||| || || || ||||||| | | || |||||| || Sbjct 4921 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAAT 4862 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || |||| | || ||| | || || ||||| Sbjct 4861 ATCCAGAAAGAATCCACCCTCCACTTAGTGCTGCGGCTCAGGGGAGG 4815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478623765961040