Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3801 125 6e-24 seq8 86.0 5e-12 >seq3801 Length=8881 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||||||| | || || ||||||||||| | | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 4069 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 4010 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || ||| ||||| || ||||||| | | | || ||| || || Sbjct 4009 CAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAT 3950 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 3949 ATCCAGAAAGAATCCAC 3933 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||||||| | || || ||||||| ||| ||| Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| ||||| Sbjct 4753 GACACCATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCAG 4694 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || || || |||| || ||| ||||| || ||||||| Sbjct 4693 CAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATG 4657 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | ||||| | || || || ||| Sbjct 5269 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGT 5210 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| |||||||| ||||| || || || || Sbjct 5209 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 5150 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 ||||| |||||| || ||| |||||||| ||||||| | | | ||||| |||||| Sbjct 5149 CAGAGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAG--ATTATA 5092 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || ||||| || || | || | ||| | | ||||| ||||| Sbjct 5091 ACATCCAGAAAGAGTCAACCCTCCACCTTGTGCTGCGTTTGAGGGGAGG 5043 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || || | || || | || || || | | Sbjct 5041 ATGCAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAGT 4982 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| |||||||||||||| || || ||||| Sbjct 4981 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 4922 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| || ||| ||||| || ||||||| | | | || ||| || || Sbjct 4921 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAAT 4862 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || |||||||| || | || |||||| Sbjct 4861 ATCCAGAAAGAATCCACCCTCCACTTAGTG 4832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || ||||||| || | | Sbjct 4357 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAACCAAGT 4298 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || || || |||||||| ||||| ||||| ||||| Sbjct 4297 GACACCATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCTCCAGATCAG 4238 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || || |||||| || ||| ||||| || ||||||| | | | ||||| |||||| Sbjct 4237 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTGTCAG--ATTATA 4180 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| || || ||||| || Sbjct 4179 ACATCCAGAAGGAATCCAC 4161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||| || | || ||| | || || || | | | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| |||||||||||||| || || || || Sbjct 5437 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 5378 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||| || || ||||||| | | | || ||||| ||| Sbjct 5377 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAAC 5318 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||| | ||| Sbjct 5317 ATCCAGAAAGAGTCCACTCTCCATCTTGTG 5288 >seq8 Length=3271537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| || ||||| || || | || ||||| | || ||| | || || ||| || Sbjct 1336278 AAAATGCAGGTTTTTGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGCCC 1336337 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||| ||| | || || ||||| || ||||||||||| || || || Sbjct 1336338 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGAGAAAGAAGGCATCCCGCCTGAC 1336397 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| || || | | ||| ||||| || ||||||| Sbjct 1336398 CAGCAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAAGATG 1336437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429902166320835