Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3801 105 5e-18 seq8 102 7e-17 >seq3801 Length=8881 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || ||||| || || || ||||||||||||| | Sbjct 4359 CCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 4418 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||||| ||| |||| | | ||||||||| || Sbjct 4419 AGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGG 4478 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || |||||| ||||| | | | ||||||| || ||| Sbjct 4479 ATGCCCTCTTTGTCTTGGATTTTTGCT--TTCACATTCTCAATGGTGTCGCTTGGTTCCA 4536 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||||| ||||| || || ||||| || ||||| Sbjct 4537 CTTCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||||||||||| Sbjct 3675 CCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3734 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || ||| | || |||| ||| ||||| || Sbjct 3735 AGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3794 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| | |||||| | | | ||||||| |||||| | Sbjct 3795 ATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACT 3854 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || ||||| || || || |||||||||||||| Sbjct 3855 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | ||||| | ||| || ||||| || || || || |||||||||| Sbjct 3902 CCCTCCCCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGA 3961 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | || || || || |||| | | ||| ||||| ||| Sbjct 3962 GAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGG 4021 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| |||| ||| || | | | ||||| | ||||| Sbjct 4022 AATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGAC 4081 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||||| |||| ||||||||||| |||||||| Sbjct 4082 TTCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| || | || || || ||||| || || || |||||||| | Sbjct 4587 CCTCCCCTGAGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAA 4646 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || || || || |||| |||| || || || ||| Sbjct 4647 AGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGG 4706 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| | ||| || | | | ||||| | |||||| | Sbjct 4707 ATGCCTTCTTTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 4766 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||||| |||| || || || ||||||||||| Sbjct 4767 TCGAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||| ||| || | ||| || |||||||| || || |||||||| || | Sbjct 5271 CCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAG 5330 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||||| || | || | || ||| ||||| || Sbjct 5331 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5390 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | |||||||| || || Sbjct 5391 ATGCCTTCTTTGTCTTGGATCTTGGC--CTTGACGTTTTCAATAGTGTCGCTTGGTTCAA 5448 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||| ||||| || ||||||||||| Sbjct 5449 CCTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 >seq8 Length=3271537 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| |||| ||||||||||| || || |||||||| | | || | | || ||| Sbjct 1336489 ACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1336430 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | || || || ||| | || |||| ||| ||||| || | ||| ||||| || || Sbjct 1336429 AGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCTTTCTCCTGG 1336370 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || |||||| | | | ||||||| ||||||| |||| ||||||||| | Sbjct 1336369 ATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCT 1336312 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| ||||| || || ||||||| ||||||||| Sbjct 1336311 TTCCTGTCAGGGTCTTCACAAAAACCTGCATTTT 1336278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405056121726430