Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3801 152 4e-32 >seq3801 Length=8881 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || ||| ||||||| |||||||||| | Sbjct 4585 ATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAGC 4526 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| ||||||| |||||||| || || || || |||||| Sbjct 4525 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCATCCCGCCAGACCAA 4466 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | ||||||||||||||||| | ||||||| || ||| || ||| ||||| Sbjct 4465 CAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAAC 4406 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || ||||||||| | || | ||||| Sbjct 4405 ATCCAGAAAGAATCCACTCTCCACTTAGTGCTACGTCTCCGGGGAGG 4359 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || ||| ||||||| ||||||| ||| || | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||||||||| ||||| || ||||| Sbjct 4069 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 4010 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | ||||| ||||| || || | ||||||| |||||| | ||| |||||| Sbjct 4009 CAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAT 3950 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||| | || || Sbjct 3949 ATCCAGAAAGAATCCACTCTCCATCTTGTACT 3918 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || || |||||||| | || ||||| | | Sbjct 5041 ATGCAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAGT 4982 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| || || || || || Sbjct 4981 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 4922 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| ||||| || || | ||||||| || ||| | ||| |||||| Sbjct 4921 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAAT 4862 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || |||||||| |||| || ||||| Sbjct 4861 ATCCAGAAAGAATCCACCCTCCACTTAGTGCTGCGGCTCAGGGGAGG 4815 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || ||||||| | || |||||| | Sbjct 5726 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTGGAGCCAAG 5667 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| || ||| |||||||| || || || || ||||| Sbjct 5666 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 5607 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||||||||| | ||||||| |||||| | ||| ||||| Sbjct 5606 GCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTCCGACTACAA 5547 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || | ||||| Sbjct 5546 CATCCAGAAAGAGTCCACTCTTCACCTTGTGCT 5514 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || ||| ||||||| ||||||| ||| | | Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||||||||| || || || || || Sbjct 4753 GACACCATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCAG 4694 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| ||||| || || | ||||||| || || | || |||||| Sbjct 4693 CAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAAT 4634 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || | || || ||||| || ||||| Sbjct 4633 ATCCAGAAAGAGTCAACCCTCCACCTTGTCCTGAGGCTCAGGGGAGG 4587 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || ||||||| | || || || | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||||||||| || || || ||||| Sbjct 5437 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 5378 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||||||||| | ||||||| |||||| | |||||||| Sbjct 5377 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAAC 5318 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || ||| | ||||| |||| || ||||| Sbjct 5317 ATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCTCAGGGGAGG 5271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433293899388455