Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3801 188 1e-42 seq8 159 6e-34 seq14 134 3e-26 >seq3801 Length=8881 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 3675 CCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3734 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||||||||| || ||||| || || ||||| || || Sbjct 3735 AGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3794 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||||||||| || || ||||| ||| ||| |||||||| ||| | || || Sbjct 3795 ATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGAC 3853 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||| || || ||||||||||| || || |||||||| Sbjct 3854 TTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||| | || || ||||| ||||| ||||| || || |||||| Sbjct 3903 CCTCCCCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAG 3962 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||||||||||||| || | ||| || ||||| || ||| Sbjct 3963 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGA 4022 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| || || ||||||||| ||| |||||||| | || ||| Sbjct 4023 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACT 4082 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||||| || | ||| ||||| || |||||||| Sbjct 4083 TCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || ||||| || ||||| ||||| ||||| || || |||||| Sbjct 4815 CCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAG 4874 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||||||||||||| || | ||||| || || || || Sbjct 4875 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGG 4934 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| ||||||||| || |||||||| || ||| || Sbjct 4935 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACC 4994 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| | ||| ||||| || |||||||| Sbjct 4995 TCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || | || || | ||| || || |||||||| ||||| || || || || Sbjct 4587 CCTCCCCTGAGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAA 4646 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||||||||||||| ||||| ||||| || || || || Sbjct 4647 AGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGG 4706 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| || || ||||||||| ||| |||||||| | || ||| Sbjct 4707 ATGCCTTCTTTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 4766 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||||| || | |||||| ||||| |||||||| Sbjct 4767 TCGAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || ||||| || ||||| ||||| |||||||| || ||||| Sbjct 4359 CCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 4418 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || ||||| || || | ||| |||||||| || || Sbjct 4419 AGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGG 4478 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| || ||||| || || ||| |||||||| || ||| ||| Sbjct 4479 ATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACT 4538 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||||| || |||||||| || || || ||||| Sbjct 4539 TCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||||||||| |||||||| ||||| ||| Sbjct 5271 CCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAG 5330 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || |||||||| || | || || ||||| || || Sbjct 5331 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5390 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| ||||||||| || || ||||| || ||| || Sbjct 5391 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACC 5450 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || | ||| || ||||| |||||||| Sbjct 5451 TCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 163 bits (180), Expect = 5e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || | ||| || ||||| || || |||||||||||||| || || || | ||| Sbjct 4143 CGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCA 4202 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | ||||||||||||||| || | ||||| || || || || ||||| || ||| Sbjct 4203 TCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTG 4262 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || ||||| || ||| |||||||| || ||| ||||| | |||||| Sbjct 4263 TCTTGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATG 4322 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||||||||| || || |||||||| Sbjct 4323 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || | ||| || || |||||||| |||||||||||||| || || || | ||| Sbjct 5055 CGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCA 5114 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||||||||||| || | || || ||||| || || ||||| || ||| Sbjct 5115 TCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 5174 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||||||| || || ||||| | ||| || || | || ||| Sbjct 5175 TCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATG 5234 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| || || |||||||| Sbjct 5235 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 150 bits (166), Expect = 3e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || | ||| || ||||||||||| |||||||| || ||||| || || | ||| Sbjct 5511 CGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA 5570 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | ||| || |||||||| || | || || ||||| || || ||||| || ||| Sbjct 5571 TCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 5630 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| |||||||| ||| |||||||| || || || || | |||||| Sbjct 5631 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGATG 5690 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || | |||||| || || ||||||||| Sbjct 5691 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 5726 >seq8 Length=3271537 Score = 159 bits (176), Expect = 6e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || ||||| |||| ||| | |||||||| || ||||| || || || || || || | Sbjct 1336498 AGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1336439 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 1336438 CCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCT 1336379 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||| |||||||| ||| | || || |||| ||| Sbjct 1336378 TTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGT 1336320 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||||| || || | ||||||| Sbjct 1336319 GATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCATT 1336280 >seq14 Length=14352415 Score = 134 bits (148), Expect = 3e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || ||| ||| |||||||| || ||||||||||| | |||||| || || || Sbjct 9651876 TCCCCCACGGAGGTGCAGCACCAAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGA 9651935 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || |||||| || | ||||||||| || || || || || |||||||| || Sbjct 9651936 GAGAGTGTGCCCATCCTCCAGCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGG 9651995 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || ||||| ||||| || || || |||||||| ||| ||||||| | || || Sbjct 9651996 GATCCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCAC 9652055 Query 68414 TTCCAAGGTGATGGTTTTTCCC 68435 ||||||||||||||||| ||| Sbjct 9652056 CTCCAAGGTGATGGTTTTGCCC 9652077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921548013552040