Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3801 113 4e-20 seq8 96.9 3e-15 seq6 82.4 6e-11 >seq3801 Length=8881 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || ||||||||| ||||| || Sbjct 5301 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCAAGCTGTTTGCCG 5360 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| || || |||||||||||||| ||||| || Sbjct 5361 GCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTG 5420 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| | | ||| || |||| ||| | || ||||| |||| ||| Sbjct 5421 ACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTT 5480 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 5481 TTCACGAAAATCTGCAT 5497 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||| ||||| || |||||| |||||||||||| || || Sbjct 5073 GTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATCTTCAAGTTGCTTCCCG 5132 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | ||| ||||| || || ||||| |||||||| ||||| || Sbjct 5133 GCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 5192 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| ||| ||| || || | || | |||||||| ||||| || Sbjct 5193 ACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGTTTTGCCAGTCAGGGTC 5252 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 5253 TTCACAAAGATCTGCATGCCT 5273 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | || |||||||| || || ||||| ||| | |||||| ||||||| Sbjct 4833 ACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATCTTCA 4892 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| | || | | || || || || || |||||||||||||| Sbjct 4893 AGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGG 4952 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | ||||| |||||| | | ||| || || | || | || ||| Sbjct 4953 ATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGTCTTG 5012 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||||| ||||||||||||||| || Sbjct 5013 CCCGTCAAGGTTTTGACAAAAATCTGCATGCCT 5045 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || || ||||| ||| | ||| || ||||||||| || || || Sbjct 3933 GTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTCCCG 3992 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | ||| ||||| |||||||||||||||||||| || || || Sbjct 3993 GCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 4052 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | ||||| || | || | ||||| || |||| ||| Sbjct 4053 ACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTT 4112 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 4113 TTGACAAAGATCTGCATGCCT 4133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| || |||||| || || || || Sbjct 3705 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGCTTCCCG 3764 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || |||||||| ||||| || || || Sbjct 3765 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTCGCCTTC 3824 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| ||||| || | || | || |||||||| || || Sbjct 3825 ACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 3884 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 3885 TTCACAAAAATCTGCAT 3901 >seq8 Length=3271537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||||| || || | |||| |||||| | || | || || || || || || ||||| Sbjct 1336513 CAAATGCCACCCCTCAGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAG 1336454 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || | ||| || |||||| || || || || || ||||||| | ||| ||||| Sbjct 1336453 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCA 1336394 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || || ||||||||||| || ||||| || | | |||| ||||||| ||| Sbjct 1336393 GGCGGGATGCCTTCTTTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGC 1336334 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| | || || || ||||| || || ||||||| |||||| Sbjct 1336333 TCCACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCAT 1336281 >seq6 Length=80741955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || | ||| || |||| |||| || |||| ||||| || ||||||||| Sbjct 46145091 TCCTCCAGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTG 46145150 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTC--AACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 || || |||| | | | ||||| ||||||||| ||| || ||||||| || Sbjct 46145151 TCCTGGAT--TTTGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTAC 46145208 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||||||| ||||| || || ||||| ||||||||| Sbjct 46145209 TTGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 46145246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420101337654684