Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq514 152 1e-31 seq4 84.2 4e-11 >seq514 Length=269024 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||| ||||||| ||||| |||||||||||| |||||| ||| || ||| || Sbjct 187576 CACCCCTTTGCTGAGGGGGCATCCCTCGTAGGTCTCGTAGGGTCCGCACTCCTTGGCGAG 187517 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || ||||| | || || ||||| |||||||||||||| |||||| || ||| | | Sbjct 187516 GTTGCAGCTGGCCTCCAGCGCGGCATAGTAGATGGTCTCAAAGATCTGCTGGTTGAGGAG 187457 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 |||||| | || |||||||| || ||||| |||||| |||| ||||| ||||| Sbjct 187456 CTGGGCCTCGGGGCTCTCGAAGGGGAAGCGCATCAGGATGAAGGCGTCCGCCAGGCCCTG 187397 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| ||||| || ||||| | ||| |||||||||||| Sbjct 187396 CACCCCGATCCCAATGGGACGGTGCCGCTTGTTGGAG 187360 Score = 129 bits (142), Expect = 1e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || |||||||||||| ||||||||||| || |||||||||||||| || |||| Sbjct 175478 ACCCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCAAAGAAGAGGTCCCTGGCCCGCTGC 175419 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| |||| || ||||||| ||| | |||||| ||| Sbjct 175418 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCAAAGTGCCAAGGC 175359 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 || | ||||| || | ||| || || |||| Sbjct 175358 TCGAGGTAGATGGCAAAGGCCCCCGGTCGCT 175328 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 181458 CCACCTCGTCATTGCTGGTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 181399 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| ||| |||||||| ||| |||||||||||| | || Sbjct 181398 TCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAG 181339 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 |||||||| ||||| ||| || | || |||||| | | ||||||||| Sbjct 181338 TGCCGGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTGACC 181283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | || ||||| |||||| || ||||| ||| Sbjct 191147 ACCTGAAACTCTCCAGAAAGGACCCTCCGGGTGTAGATGTTGCTCGTGTAGGGCTCTATG 191088 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| |||||| || || ||||| || | |||||| || Sbjct 191087 GACTCGTTGTTGCCCAGGATCTGAGCCGTGGAAGCCGTGGGCATCGGGGCCACCAGGAGG 191028 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||| || |||||||| Sbjct 191027 CTGTTCCGGACCCCGTGCCT 191008 >seq4 Length=156502444 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| || ||| || | || || || ||||||||||| || ||||| || Sbjct 14021104 GGGGAGAGAGTGGTTGCTTTTGCCTCGGTTGAAGGAATCTTCTTCTCTGGTGCCTTTGCA 14021163 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | ||||| ||||||||| | | ||| | |||||| || ||||| ||||| || ||||| Sbjct 14021164 GCTATCTTTTGGCTCAAGAAAAGAGGACT-GATGCCGGGTCTCACTTTCTCCAATGAACT 14021222 Query 42815 CATCAGCAGGGACGA 42829 || ||| | || || Sbjct 14021223 TATTAGCCGTGATGA 14021237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944262980022320