Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3801 127 5e-24 seq6 96.9 8e-15 >seq3801 Length=8881 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || || | ||| || || ||||| || ||||||| Sbjct 3675 CCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3734 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || |||||| Sbjct 3735 AGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGG---TCTGGG 3791 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || ||||||||||| |||||||| || || | ||||| | || Sbjct 3792 GGGATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCG 3851 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 3852 ACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || || || || ||||| | || || || ||||| Sbjct 4623 TCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAA 4682 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | || ||| ||||| ||| |||||||| || ||||||||||| || ||| Sbjct 4683 ATGAGCCTTTGCTGA---TCTGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTGACG 4739 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || |||||||| ||||| || || || |||| ||||| Sbjct 4740 TTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTCTTC 4799 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4800 ACGAAAATCTGCAT 4813 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| ||||| || | || ||||| || ||||| | || || || ||||| Sbjct 4166 TTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAA 4225 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| | || ||| ||||| ||| || ||||| || ||||||||||| || || Sbjct 4226 AATCAACCTTTGCTGA---TCTGGAGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAAC 4282 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct 4283 ATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTT 4342 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 4343 CACAAAGATCTGCAT 4357 >seq6 Length=80741955 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 ||| |||||||| ||||| | ||| ||| | ||||| || | || | ||||| ||||| Sbjct 46145057 TTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCCTCCAGCTGCTAACCTGCAAAGAT 46145116 Query 288345 CAGACGCT----GTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||||| || |||| || ||||| |||||||| ||||||||||| | || | || Sbjct 46145117 CAGACACTACTGGTTGGGA----GGGATCCCTTCTTTGTCCTGGATTTTGGTCTTGATGT 46145172 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || | | || || | || || || | ||| | || || || ||||| ||||| | Sbjct 46145173 TCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTTGTTTTGCCCGTCAGGGTCTTCA 46145232 Query 288461 CGAATATCTGCATTATG 288477 | || |||||||| ||| Sbjct 46145233 CAAAGATCTGCATGATG 46145249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179556806822846