Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3801 136 4e-27 seq14 89.7 5e-13 >seq3801 Length=8881 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||| || || ||||| || | || ||||| | || Sbjct 3917 AAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATC 3976 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| ||||| |||| | | ||||||||| |||||||| |||||||| || Sbjct 3977 TTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTC 4036 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGG 64409 ||| ||||| ||| || ||| | || |||| |||| || ||||| | ||| | || Sbjct 4037 TTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGC-TCGACTTCGAGAGTGATGG 4095 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| ||||| || || || ||||| Sbjct 4096 TTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | ||||| || |||| || || ||||| || |||||||| || | Sbjct 5498 ACCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 5557 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||||||||| |||||||| | || | || ||||||||| || || Sbjct 5558 AAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 5617 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| ||||| || || ||| ||| ||| | || |||| | ||||| Sbjct 5618 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCAC 5677 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAA 64448 |||| ||| | ||||||||| ||||| || || || || || |||||||||| Sbjct 5678 CTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTAA 5730 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || || || | || || ||||| || || ||||| |||| | ||| || | Sbjct 4599 CTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCA 4658 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 |||||||||||||| ||||| ||||||||| ||||| || ||||| || |||||||| Sbjct 4659 TCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTG 4718 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| ||||| ||| || ||| | || |||| || || ||||| | ||| | | Sbjct 4719 TCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATG 4778 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| || || |||||||| ||||| Sbjct 4779 GTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||| || ||||||||||||| || ||||| | ||| Sbjct 5286 AGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCT 5345 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| |||||||| | || | || ||||||||| || || || |||||||| ||| Sbjct 5346 TCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCT 5405 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | | || || || | || | |||| Sbjct 5406 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTC 5465 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| ||||| |||||||| ||||| Sbjct 5466 TTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||| | ||| Sbjct 3690 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCT 3749 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| | ||||||| ||||||||| || || || ||||| || ||| Sbjct 3750 TCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 3809 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || ||| | || || | || || ||||| | ||| | |||| Sbjct 3810 TGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTC 3869 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || || ||||| ||||| Sbjct 3870 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||| ||||||| | ||||| | |||||||||||||| ||| Sbjct 4161 GTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATCTTCAAGCTGCTTCCCG 4220 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || ||||| || ||||| || || ||||| ||||| ||||| ||| Sbjct 4221 GCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTA 4280 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | |||||||| | ||| | ||||||||| || | || Sbjct 4281 ACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 4340 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 4341 TTCACAAAGATCTGCAT 4357 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | || |||||||| || |||||||| || | | || || | ||| Sbjct 4374 AGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 4433 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| ||||||||| |||| | | ||| ||||| || || || || ||||| ||| Sbjct 4434 TCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCT 4493 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||||||||| ||| ||| | || || | | |||||||| | ||| | ||| Sbjct 4494 TGGA-TTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGGT 4552 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| || || || || |||||||| Sbjct 4553 TTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | || |||||||| || || ||||| || | || || || | ||| Sbjct 4830 AGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATCT 4889 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| |||| | || ||||| || || || || |||||||| ||| Sbjct 4890 TCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTCT 4949 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || |||| | ||||| |||| || | |||| Sbjct 4950 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGTC 5009 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| ||||| || ||||| ||||| Sbjct 5010 TTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 >seq14 Length=14352415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| | |||||||| |||| || ||| || | || || |||||||| || Sbjct 9651907 GTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATCCTCCAGCTGCTTCCCT 9651966 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || |||||||||||||||| || |||||||| || || ||||| ||| Sbjct 9651967 GCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTG 9652026 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| || || || ||||| || | || | ||| ||||| |||| | Sbjct 9652027 ACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGTTTTGCC---CAAA-AT 9652082 Query 64427 TTTACGAAAATT 64438 || || |||||| Sbjct 9652083 TTGACCAAAATT 9652094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499604472419080