Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3801 107 2e-18 seq514 107 2e-18 seq6 91.5 1e-13 >seq3801 Length=8881 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||||| || | | || || || || |||||||||||| Sbjct 4358 GCCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 4417 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| || || || ||||| |||| | | || | | ||||||||| || || Sbjct 4418 CAGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGG 4477 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||||||| ||| | | || | ||||||| | | ||||| Sbjct 4478 GATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCAC 4537 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | ||||| |||||||| || || ||||| || |||||| || Sbjct 4538 TTCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCATGCCT 4589 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 |||||||| || | |||| || | || | | | |||||||| || |||||||||||| Sbjct 3672 CAGCCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3731 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | ||| || || ||||| || || |||| | |||| || | ||| ||||| || Sbjct 3732 GAAAGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGG 3791 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| |||||| || | | || | ||||||| | | ||| Sbjct 3792 GGGATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCG 3851 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| || | || || || || || || || |||||||||||||| Sbjct 3852 ACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || || ||||||||| | ||| || || || || || || |||| Sbjct 3936 GATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCG 3995 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | | ||| ||||| ||||| || ||||||||||| |||||| || | Sbjct 3996 AAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACG 4055 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||| || |||| || | ||||| ||||||| ||||| Sbjct 4056 TTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTG 4115 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 4116 ACAAAGATCTGCATGCCT 4133 >seq514 Length=269024 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||||| ||||||||||||||| || ||| |||| || ||||| | Sbjct 181440 TGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGT 181381 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || | ||||| | ||||||| ||||||||||||| ||||||||| Sbjct 181380 TGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCCGGTCTC 181329 >seq6 Length=80741955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 138395 GCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC 138454 ||| | |||| || || || | | | ||| || || || |||||||| | ||| Sbjct 46145026 GCAGATGCAACACCAAGTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGT 46145085 Query 138455 GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTT 138514 || |||||| || || | ||| | | |||| |||| || |||| ||||| || |||| Sbjct 46145086 GCCCGTCCTCCAGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTT 46145145 Query 138515 CTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACC 138573 ||||||| || |||| || || || | || |||||||| | | |||||| || | | Sbjct 46145146 CTTTGTC-CTGGATTTTGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAAC 46145204 Query 138574 GTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || ||||| || ||||| || || ||||| ||||||||| Sbjct 46145205 GTACTTGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 46145246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496222345421040