Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3801 114 1e-20 seq514 104 2e-17 >seq3801 Length=8881 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || |||||||| ||| | ||||| ||| || ||||| || || Sbjct 3933 GTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTCCCG 3992 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||| |||||| || ||||| ||||| || ||||| |||||| |||| Sbjct 3993 GCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 4052 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||||||||| || | ||||| || |||| ||| Sbjct 4053 ACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTT 4112 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 4113 TTGACAAAGATCTGCATGCCT 4133 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| | ||||| | Sbjct 3687 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA 3746 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| || || || ||||| |||||| Sbjct 3747 TCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTG 3806 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||||||| ||| | | || | |||||| | ||||||||||| || | Sbjct 3807 TCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATG 3866 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || |||||||||||||| Sbjct 3867 GTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || |||||||| || || |||||||| | ||||| | Sbjct 5283 CGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCA 5342 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || ||| ||||||| | |||||| || || || ||||| || ||| Sbjct 5343 TCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTG 5402 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | ||| | ||||| | || || || | ||| | Sbjct 5403 TCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATG 5462 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| ||||| || ||||||||||| Sbjct 5463 GTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || |||||||| || | || || ||| || ||||| || || Sbjct 4617 GTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCAAGCTGCTTCCCG 4676 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | | |||||||| ||||| ||||| || ||||| ||||||| |||| Sbjct 4677 GCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTG 4736 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| ||||||| || | ||||| || |||| || Sbjct 4737 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTC 4796 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || |||||||||||| || Sbjct 4797 TTCACGAAAATCTGCATGCCT 4817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| || || | || || ||||| || |||||||| ||| | || || | Sbjct 4827 CGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCA 4886 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | ||||| | |||||||| || || ||||| || ||| Sbjct 4887 TCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTG 4946 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | ||| | |||||| | || || || | || | Sbjct 4947 TCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATG 5006 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| |||| ||||| ||||||||||||||| || Sbjct 5007 GTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCATGCCT 5045 >seq514 Length=269024 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||| ||| | |||| ||| ||||||| |||||||||||||||||||||| | || Sbjct 181454 CTCGTCATTGCTGGTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCC 181395 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| ||| ||||||||||||||||| || Sbjct 181394 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCC 181335 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 ||| || | || ||||| |||| Sbjct 181334 GGTCTCAGTCTGGGACTCGATGATG 181310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475462421141680