Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq24 125 1e-23 seq1614 123 4e-23 >seq24 Length=4717188 Score = 125 bits (138), Expect = 1e-23 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 |||||||||||||| || || || | ||| ||| | ||| ||| |||| | Sbjct 2265056 ATGGAATTGTTGTAGACAAACTGCTGATAAGTATATTCTTGGTCCTGAATGTTAAAAGTA 2264997 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| |||| ||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 2264996 TCAGGCAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCGGCTGCTATTCTGTTCTGA 2264937 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || | ||| || || | ||| || ||||| | |||| |||||| || | Sbjct 2264936 TACTGGAATCGTTGGT--TAAAGAGCAGCTCTGGATCAAACTTCAGCTTGAAGTGATAGC 2264879 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| ||||| | | || | ||| ||||||||||| || || Sbjct 2264878 CACTTAAATGCTGTACATAGTCTTCAATCACAATCTTAATGGTTTCACCTGT 2264827 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| |||| ||| || || ||||||| ||||| || ||| ||||| || || Sbjct 2264356 GTTGTTTGGAACAGCTGTTCATCGTCCCATTCTGGGTGCTCCCCTTTAAGAACGTCACAC 2264297 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||| | ||||| | || || |||||||| | || || || |||||| Sbjct 2264296 ACCCGGTTGTGTTCCCGTAGCCACAATGTCGCATACATCATCAGTCCTGGAACCAAACCA 2264237 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 || || || | ||| || ||| | || | || || | | ||| | ||| | ||| Sbjct 2264236 AAGACCTCTTGCCCTACACAAAATCTCAAGTGCTCAGGGATATGGGGTGGATAGATCATT 2264177 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || ||||| || ||||| ||||||||||| || || || | ||| Sbjct 2264176 TCTGCCTGAGTGTCTTTCACTGTGGGTGGATACATTTCTCCATCGATCATCTG 2264124 >seq1614 Length=25508 Score = 123 bits (136), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 |||||||||||||||||||| ||||||||| | |||||||||||| |||| ||| || Sbjct 6309 TCCCCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGG 6368 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || |||| ||| || || ||||| | ||| | |||||||| || |||||||| | || Sbjct 6369 CCCTTCAGGGAGAAGGGCGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCCCGCGGC 6428 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 ||| || || || | | || | ||||| || || || |||| |||||| || || Sbjct 6429 TGCGCCTTCTCCACCAGCATCCCCGGGTAGAACTCCACTGCGTCGATGTCGCCGTACAGC 6488 Query 9143 GCTTCCAA 9150 | ||||| Sbjct 6489 TCCTCCAA 6496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723669586103800