Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq8 138 3e-27 seq3801 132 1e-25 seq14 89.7 1e-12 >seq8 Length=3271537 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || || ||||| | || |||||||| |||| |||||||||| | ||| | Sbjct 1336498 AGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1336439 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||| ||||| |||||||| | ||||||||| || || |||||| Sbjct 1336438 CCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCT 1336379 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||||| ||||| |||||| || | |||||| | | || || |||| ||| Sbjct 1336378 TTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 1336319 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAA 199622 || ||||| || || || || |||||||||| Sbjct 1336318 ATGGTCTTTCCTGTCAGGGTCTTCACAAAAA 1336288 >seq3801 Length=8881 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| | | ||| Sbjct 3681 CGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTG 3740 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||| |||||||| | ||||||||| || || ||| Sbjct 3741 CGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCT 3800 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||| || | |||||| | | || || || | Sbjct 3801 TCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGA 3860 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||||||||| || Sbjct 3861 GTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTG 3898 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| |||||||| ||||| || |||| |||||| || | | ||| | ||||| Sbjct 5285 CAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATC 5344 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| ||||| || ||||||||||| | | ||||||||| || || |||||| || Sbjct 5345 TTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTC 5404 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| ||| | ||||| ||| ||| || |||| ||||| || Sbjct 5405 TTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGT 5464 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | |||||||| ||||| || Sbjct 5465 CTTGCCAGTCAAGGTTTTCACGAAAATCTG 5494 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||||||||||||||| || ||||| |||| ||| || || | || ||| | ||||| Sbjct 4145 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATC 4204 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| |||||||| || | | ||||| || ||| || || ||| || Sbjct 4205 TTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTC 4264 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || || ||| || || | |||||| ||| ||| || || | ||||| || Sbjct 4265 TTGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGT 4324 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 4325 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 4354 Score = 111 bits (122), Expect = 4e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| ||||| || |||| ||||||||| | | ||| | ||||| Sbjct 5513 CAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 5572 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| ||||| || ||||||||||| | | ||||||||| || || || ||| || Sbjct 5573 TTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5632 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| ||| || || || | ||||| || Sbjct 5633 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGATGGT 5692 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 ||| || || | || |||||||| || || ||||||| Sbjct 5693 CTTGCCAGTCAAGGTCTTCACAAAGATCTG---CATTTTA 5729 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || ||||||||||||||||| || ||||| || |||| |||||||| | | || | Sbjct 4596 AGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGG 4655 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| |||||||| |||||||| ||||| | ||||| || ||| || |||||| Sbjct 4656 CCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCT 4715 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || || || ||| ||| || | |||||| | | || || || | ||| Sbjct 4716 TTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTG 4775 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || | || ||||| ||||| || Sbjct 4776 ATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTG 4810 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||||||||| || ||||| || |||| ||| || || | || ||| | ||||| Sbjct 5057 CAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATC 5116 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| || ||||| |||||||| || | | ||||||||| || || || ||| || Sbjct 5117 TTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5176 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| ||| | ||||| | | ||| || || | || || || Sbjct 5177 TTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGT 5236 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 5237 TTTGCCAGTCAGGGTCTTCACAAAGATCTG 5266 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| || ||| | |||||||| | ||| | |||| |||||| |||||||| Sbjct 5596 ATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTCCGACTACAACATCCAGAAA 5537 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| |||||||||||||| Sbjct 5536 GAGTCCACTCTTCACCTTGT 5517 >seq14 Length=14352415 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | |||||| || ||||| || | || ||||||||| | | ||| ||||| Sbjct 9651891 CAGCACCAAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATC 9651950 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| ||| |||||||||| ||| || |||||| || Sbjct 9651951 CTCCAGCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTC 9652010 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || |||||| | | || || ||||| ||||| || Sbjct 9652011 CTGGATTTTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGT 9652070 Query 199597 CTTACCC 199603 || ||| Sbjct 9652071 TTTGCCC 9652077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178824067447619