Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3801 149 7e-31 seq8 140 4e-28 seq6 118 1e-21 seq14 84.2 2e-11 >seq3801 Length=8881 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||||| ||| || || | || ||| || ||||| ||||||||||| Sbjct 5499 CCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 5558 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||| ||||||||||| ||||| | ||||||||| | || Sbjct 5559 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5618 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 5619 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACC 5678 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | |||||||| ||||| |||| || || |||||||| |||||||| Sbjct 5679 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 5728 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||||||||||||||| |||||||| | || || |||||||| |||||||| Sbjct 3939 TCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAA 3998 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || || ||||| ||| || ||||| || Sbjct 3999 ATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTC 4058 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| |||| || || || | ||||||||||| || |||| ||||| ||| Sbjct 4059 TCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACA 4118 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 4119 AAGATCTGCAT 4129 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || ||||||| ||| || || | || ||| || ||||| || || || | Sbjct 5041 TGCCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTG 5100 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || || ||||| |||||||| ||||| | ||||||||| | | Sbjct 5101 ACAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGG 5160 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| ||||| |||||| ||||| | | | ||||| || | ||||| Sbjct 5161 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCA 5220 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||||||||| ||||| || || |||||||| ||||| Sbjct 5221 CCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| ||| ||||| | || ||| || ||||| ||||| || | Sbjct 5269 TGCCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTG 5328 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| ||||||||||| ||||| | ||||||||| | | Sbjct 5329 AGAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 5388 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||||| | | | |||||||| | ||| | Sbjct 5389 GGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAA 5448 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| |||| ||||| || || || ||||| Sbjct 5449 CCTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| ||||| || | || || ||||| |||||||| || Sbjct 4395 TCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAA 4454 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||| ||||| | ||| | || ||| ||||| ||| || || | || Sbjct 4455 ATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTC 4514 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| | |||||| || | ||||||||||| || ||||| || || ||| Sbjct 4515 TCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACA 4574 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 4575 AAGATTTGCAT 4585 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||||||||| |||||||| | Sbjct 3687 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA 3746 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| ||||| || || | | ||||||||| | || | || |||||| Sbjct 3747 TCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTG 3806 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || ||| ||| ||| | || | | |||||||| | || || || | |||||| Sbjct 3807 TCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATG 3866 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || ||||| || ||||| Sbjct 3867 GTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| ||| | || | || || || |||||||||||||||| Sbjct 4813 TGCCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGG 4872 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || |||||||| |||||||| ||||| | ||||| || | | Sbjct 4873 AGAGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGG 4932 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||||| | | | ||||| || | ||||| Sbjct 4933 GGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCA 4992 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| |||||||||| ||||| ||||| || ||||| Sbjct 4993 CCTCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| || || || || | || || |||||||| |||||||| Sbjct 4622 CTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAA 4681 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||| || | || | || || ||||| ||| ||| ||||| | Sbjct 4682 AATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTGACGTT 4741 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || || | ||||||||||| || |||| || || || Sbjct 4742 CTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTCTTCAC 4801 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 4802 GAAAATCTGCAT 4813 >seq8 Length=3271537 Score = 140 bits (154), Expect = 4e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||||| ||||| || |||||| |||||||||||||| | Sbjct 1336509 TGCCACCCCTCAGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAG 1336450 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 1336449 AAAGAGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCG 1336390 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || || ||| |||||| ||| | || | | |||||||| | |||| Sbjct 1336389 GGATGCCTTCTTTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 1336330 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | |||| |||||||| || || ||||| || || ||||| | |||||||| Sbjct 1336329 CCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCATTTT 1336278 >seq6 Length=80741955 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || |||||||||||||| || |||||| || |||| || ||||||| || || || ||| Sbjct 46145058 TTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCCTCCAGCTGCTAACCTGCAAAGATC 46145117 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | | || ||||| || || | | || |||||| ||| || |||||| || | Sbjct 46145118 AGACACTACTGGTTGGGAGGGATCCCTTCTTTGTCCTGGATTTTGGTCTTGATGTTCTCA 46145177 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 || ||||| || | ||||| |||| ||| | |||||||||||||| || || |||||| Sbjct 46145178 ACGGTGTCACTGGGCTCCACGTCCAACGTACTTGTTTTGCCCGTCAGGGTCTTCACAAAG 46145237 Query 46586 ATTTGCAT 46593 || ||||| Sbjct 46145238 ATCTGCAT 46145245 >seq14 Length=14352415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || | ||| |||||||| || |||||| || | || || |||||||| || || || Sbjct 9651912 CTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATCCTCCAGCTGCTTCCCTGCAAA 9651971 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| || | | || |||||| ||| || ||||| | Sbjct 9651972 GATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTGACATT 9652031 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 | | |||||| | | ||||| |||| ||||||||||||||| Sbjct 9652032 CTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGTTTTGCCC 9652077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565192778195640