Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3801 131 2e-25 seq14 104 2e-17 seq6 84.2 2e-11 >seq3801 Length=8881 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| |||| |||||| ||| | Sbjct 3901 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGCCCAGC 3842 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| ||||| || || || ||| | ||||| Sbjct 3841 GACACCATTGAGAACG-TGAAGGCGAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCA 3783 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || || || ||||| || || | ||||| || ||||||||| Sbjct 3782 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAAGATGGCCGCACTCTTTCCGACTACAA 3723 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||||||||| | | |||||| Sbjct 3722 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTCCGGGGCGGC 3674 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || ||||||||||| |||| || || | | | Sbjct 4585 ATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAGC 4526 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| |||||||| ||||||||||| || |||||| ||||| Sbjct 4525 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCAT-CCCGCCAGACCA 4467 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | |||| || ||||||||||| || || | || || || ||||||||| Sbjct 4466 ACAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAA 4407 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || || ||||| ||| Sbjct 4406 CATCCAGAAAGAATCCACTCTCCACTTAGTGCTACGT 4370 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || ||||| |||||||| | || || ||| | Sbjct 5728 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTGGAGCCA 5669 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||||||||| || ||| | ||| Sbjct 5668 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGAC 5609 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | || | ||| ||||||||||| || || | ||||| || ||||||| Sbjct 5608 CAGCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTCCGACTAC 5549 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || || | || || || | |||||||||||||| || || Sbjct 5548 AACATCCAGAAAGAGTCCACTCTTCACCTTGTGCTGCGTTTGAGGGGAGG 5499 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || ||||| ||||||||| | || || || | | | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| |||||||| || || ||| | ||||| Sbjct 5437 GACACTATTGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCA 5379 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||||||||| || || | ||||| ||| || ||||| Sbjct 5378 GCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAA 5319 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || ||| | |||||||| | || || ||| Sbjct 5318 CATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCTCAGGGGAGGC 5270 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || ||||||||||| |||| |||||| | | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | ||||||| |||||||| || ||||| | ||||| Sbjct 4069 GACACCATTGAGAACG-TCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCA 4011 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 4010 GCAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 3951 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || || ||| | || || ||| Sbjct 3950 TATCCAGAAAGAATCCACTCTCCATCTTGTACTTCGT 3914 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| |||| || || | | Sbjct 4357 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAACCAAGT 4298 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | ||||||| ||||||||||| || || | || || Sbjct 4297 GACACCATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCTCCAGATCAG 4238 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || || ||||| || || | ||||| || || || ||| Sbjct 4237 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTGTCAGATTATAAC 4178 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || | || ||||||||||| || ||| Sbjct 4177 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGTTTGAGGGGAGGC 4130 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||||||||| || | || || || ||| Sbjct 5269 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGT 5210 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 5209 GACACTATTGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 5151 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| || || || || || || | || || || || || || Sbjct 5150 GCAGAGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAGATTATAA 5091 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || | |||||||||||||| || ||| Sbjct 5090 CATCCAGAAAGAGTCAACCCTCCACCTTGTGCTGCGTTTGAGGGGAGGC 5042 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||||||||| |||| || ||| ||| Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | ||||||| |||||||| || || || | || || Sbjct 4753 GACACCATTGAGAACG-TCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 4695 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || ||||||||| ||| || || ||||| || || | || ||||| |||||||| Sbjct 4694 GCAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAA 4635 Query 38423 CATCCAAAAGGA 38434 ||||| || || Sbjct 4634 TATCCAGAAAGA 4623 >seq14 Length=14352415 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 38270 GGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG-TGCAAACGCTTAAAGAAA 38328 |||||||||||||||| | || || ||| ||| ||||| | || || | | || | | Sbjct 9652077 GGGCAAAACCATCACCTTGGAGGTGGAGCCCAACGACACCACTGAGAATG-TCAAGGCCA 9652019 Query 38329 AAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAAC 38388 |||||| |||||||| || || || ||||||| |||| || || | || || || | Sbjct 9652018 AAATCCAGGACAAAGAAGGGATCCCTCCCGACCAGCAGCATCTAATCTTTGCAGGGAAGC 9651959 Query 38389 AGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATT 38448 ||||||| || | || ||| ||| |||||||||||| | || || | || || || | Sbjct 9651958 AGCTGGAGGATGGGCACACTCTCTCAGACTACAACATCTAGAAAGAGTCCACCCTCCACT 9651899 Query 38449 TGGTGCTGC 38457 ||||||||| Sbjct 9651898 TGGTGCTGC 9651890 >seq6 Length=80741955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||||||||| | || | ||||| ||| ||| Sbjct 46145245 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACAAGTACGTTGGACGTGGAGCCCAGT 46145186 Query 38304 GACAGCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| ||| | | | | |||| ||||||| |||||||| || || || || |||| Sbjct 46145185 GACACCGTTGAGA-ACATCAAGACCAAAATCCAGGACAAAGAAGGGATCCCTCCCAACCA 46145127 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || || | || || | |||||||| |||| || ||| ||| |||||||| Sbjct 46145126 GTAGTGTCTGATCTTTGCAGGTTAGCAGCTGGAGGACGGGCACACTCTCTCAGACTACAA 46145067 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGC 38457 ||||| || | || || || |||||| ||| Sbjct 46145066 TATCCAGAAAACGTCCACCCTCCACTTGGTGTTGC 46145032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500132429802880