Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3801 107 8e-18 seq1 87.8 7e-12 >seq3801 Length=8881 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || || || ||||| || || ||| || | Sbjct 4357 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAACCAAGT 4298 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| ||||| ||||| || || || || ||||| ||||| Sbjct 4297 GACACCATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCTCCAGATCAG 4238 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || |||||| | ||||| || ||||||||||| | ||| || | |||||||| Sbjct 4237 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTGTCAGATTATAAC 4178 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 4177 ATCCAGAAGGAATCCACTCTCCAC 4154 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| ||||| || ||||| || || ||| || Sbjct 4585 ATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAGC 4526 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| |||||| ||||| || || || || || || || ||| Sbjct 4525 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCATCCCGCCAGACCAA 4466 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || ||||| | || ||||| ||||||||||| | ||| || | || || || Sbjct 4465 CAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAAC 4406 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | || || |||||||| Sbjct 4405 ATCCAGAAAGAATCCACTCTCCACTTAGT 4377 Score = 95.1 bits (104), Expect = 5e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||||| ||||| || ||||| || ||||| | | Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| ||||| || ||||| || ||||| ||||| Sbjct 4753 GACACCATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCAG 4694 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | ||||| || ||||||||||| | || | | || || ||| Sbjct 4693 CAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAAT 4634 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || |||| || ||| | || | || || || ||| Sbjct 4633 ATCCAGAAAGAGTCAACCCTCCACCTTGTCCTGAGGCTCAGGGGA 4589 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| |||| || || || || || || || || ||| || | Sbjct 5041 ATGCAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAGT 4982 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | || || || ||||| || ||||| || || || ||||| Sbjct 4981 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 4922 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || |||||| | ||||| || ||||||||||| | ||| | | || || ||| Sbjct 4921 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAAT 4862 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | || || |||||||| Sbjct 4861 ATCCAGAAAGAATCCACCCTCCACTTAGT 4833 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| ||||| |||||||| || || ||| | | Sbjct 5269 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGT 5210 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || ||||| || || || || || || || || Sbjct 5209 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 5150 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | ||||| |||||||||||||| | ||| || | |||||||| Sbjct 5149 CAGAGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAGATTATAAC 5090 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | || || |||| || ||| Sbjct 5089 ATCCAGAAAGAGTCAACCCTCCAC 5066 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| ||||||| ||||| || ||||| || || || | | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| ||||| || ||||| |||||||| || || Sbjct 4069 GACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 4010 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | ||||| || ||||||||||| | ||| | | || || ||| Sbjct 4009 CAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAT 3950 Query 391230 AT 391231 || Sbjct 3949 AT 3948 >seq1 Length=263920458 Score = 87.8 bits (96), Expect = 7e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || || ||||||||||| | || || ||||| ||||| ||||| Sbjct 1382427 GCCGTCATCACTGTGCCGGCGTATTTCAATGACTCCCAGCGCCAAGCCACTAAGGATGCC 1382368 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || |||| | ||||||||||| || |||||||| || ||||| ||||| | Sbjct 1382367 GGCACCATCACTGGCCTCAATGTTCTTCGCATCATTAATGAGCCCACAGCTGCTGCCATC 1382308 Query 451442 GCATATGGACT 451452 || ||||| || Sbjct 1382307 GCCTATGGCCT 1382297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975554948199356