Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq78 100 2e-15 seq7 98.7 8e-15 seq1 93.3 3e-13 seq11 87.8 1e-11 >seq78 Length=2017131 Score = 100 bits (110), Expect = 2e-15 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 366997 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 367056 ||||| || |||| ||||| ||||| || |||||| | ||| || || ||||||||| Sbjct 487725 GTAGCTACTGTAGCCTTTGGAATGGGCATCAATAAAGCAGATATTCGAACAGTTATTCAT 487784 Query 367057 TATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 367116 ||||||||||| ||| | || ||| || ||||| |||||||| || || || |||||| Sbjct 487785 TATGGAGCTCCAAAGGAAATGGAATCATACTATCAGGAAATTGGAAGGGCTGGCCGTGAT 487844 Query 367117 GGA 367119 ||| Sbjct 487845 GGA 487847 >seq7 Length=7025928 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | ||||| |||| |||||||||||||||||| ||||| || | | ||| Sbjct 3023558 TTTTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCGTTAATGATCCGGAGCACA 3023617 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 3023618 TTGAGACCAGCAATGGTTCCCGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAGTAG 3023677 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 3023678 GCTGGGACTGTGACCACAGCAT 3023699 >seq1 Length=263920458 Score = 93.3 bits (102), Expect = 3e-13 Identities = 667/1060 (63%), Gaps = 22/1060 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || || ||||| || || ||||| ||||| | ||||| || || || ||||| || || Sbjct 1381376 GCCGTGACATTGAGGATCCCATTAGCATCAATGTCAAAAGTCACCTCGATTTGGGGCACA 1381435 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || |||||||| || | ||| | ||||| |||||| || || Sbjct 1381436 CCACGGGGGGCTGGAGGGATCCCCGTCAGGTCAAACTTGCCCAGCAGATTATTGTCCTTT 1381495 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || || ||||| | | ||| | || | || || |||||||| Sbjct 1381496 GTCATGGCTCTCTCGCCCTCATACACTTGCACCAACACGCTGCTCTGGTTGTCTGAATAG 1381555 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || || || | ||||| ||| || |||||| || ||||| | | || | || Sbjct 1381556 GTGGTGAA-AGTCTGGGTTTGCTTGGTAGGAATGGTGGTGTTACGCTTGATCAAGGCTGT 1381614 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | |||||||| || || | |||||||| || || | || |||| || | | Sbjct 1381615 CATCACTCCACCTGCCGTCTCAATGCCAAGAGACAGTGGTGCCACGTCAAGGAGCAGCAG 1381674 Query 517558 ATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 | || | || || | | || | ||| | || || || || || | ||||| |||| Sbjct 1381675 GTCCTGTACATTCTC-TGACTTGTCACCCATCAGGATGGCCGCCTGTACCGCAGCCCCAT 1381733 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 517676 | || || |||||||| ||||| | ||| || || | ||| ||||| || || | | Sbjct 1381734 AGGCCACCGCTTCATCGGGATTGATGCTTTTGTTGAGCTCTTTGCCATTAAAGAAGTCTT 1381793 Query 517677 AAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || || | ||| | ||||||||| |||| || || ||||| | ||||| |||| Sbjct 1381794 GCAGCAGCT-TCTGGATCTTAGGAATGCGAGTGGAGCCGCCAACAAGCACAATCTCATTG 1381852 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC-AAGACCCGC 517794 | ||| ||| || || || | ||| | | || || || || || ||| | | Sbjct 1381853 ATCTGGCCTTTGTCTAGCTTGGCATCACGGAGGGCCTTCTCCACTGGCTCCAAGGTGC-C 1381911 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 517852 | || | ||| | || || || || ||| | || || || | || || Sbjct 1381912 GCGGAAGAGGTCGGCGTTGAGCTCCTCAAAGCGAGCCCGGGT--GATGGATGTATAGAAG 1381969 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 || || || |||||||| || || | || || | | || || || || || | Sbjct 1381970 TCGATGCCATCGAACAAGGAGTCGATCTCGATGGAGGCCTGGGTGGAGGAGCTGAGGGTG 1382029 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 || || || | || || ||||| | || | || | ||| ||| ||| | | Sbjct 1382030 CGCTTGGCCCTCTCGCAGGCTGTGCGCAGCCGCCGGACGGCCC--GCTTGTTGCCAGCGA 1382087 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 || ||| | || | |||||| || || ||| | | || | || || || | Sbjct 1382088 TGTCGCGTTTGTGCTTGCGCTTGAACTCCTCCACAAAGTGGCTCACCATGCGGTTGTCGA 1382147 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || |||||||| | || | || | ||| | | || | || | ||||||| Sbjct 1382148 AGTCCTCGCCTCCCAAGTGGGTGTCACCAGCCGTGGACTTCACCTCAAAGATGCCATCTT 1382207 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 | | | ||| | | ||||| ||| ||||| |||| || || || || |||||| Sbjct 1382208 CGATGGTCAAGATGGAGACATCGAAGGTGCCACCGCCCAGGTCGAAGATGAGGACATTCT 1382267 Query 518151 TTTCTTTGTCT----TGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | | || ||| | || || ||||| || | |||||||| || || | Sbjct 1382268 TCTCGCCGGCCCCACTGCCTTTCTTGTCCAGGCCATAGGCGATGGCAGCAGCTGTGGGCT 1382327 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 ||||||| || | | |||||| || |||| || | || ||||| ||||||||||| | Sbjct 1382328 CATTAATGATGCGAAGAACATTGAGGCCAGTGATGGTGCCGGCATCCTTAGTGGCTTGGC 1382387 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || || || || ||||| || || ||||| || ||||| Sbjct 1382388 GCTGGGAGTCATTGAAATACGCCGGCACAGTGATGACGGC 1382427 Score = 89.7 bits (98), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 1047660 TAATAAATTTACAGGAAAATTATTTTATGATATTGTTATGGGTATTGAATTTAATCCTGA 1047719 || |||||| || || || || || || || | | ||||| ||||||||||||||| Sbjct 56050016 TAGTAAATTCACTGGTAACTTCTTCTACGACTTCATGATGGGAATTGAATTTAATCCTCG 56050075 Query 1047720 AATATTTG---GAACTGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTG 1047776 ||| | | |||||| ||||||||||| |||||| | || || ||| | || || Sbjct 56050076 TATAGGAGAGTGGTTTGATTTCAAACTGTTTTTCAATGGTCGCCCAGGCATTGTAGCATG 56050135 Query 1047777 GAATTTGATTAATTTGTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAA 1047836 || | | ||||| | || | |||| ||||| | ||| | |||| | || ||||| Sbjct 56050136 GACTCTTATTAACCTCTCCTATGCAGCAAAACAGCAGGAACTATATGGACAAGTATCTAA 56050195 Query 1047837 TTCAATGATTCTTGT 1047851 ||| ||||| ||||| Sbjct 56050196 TTCTATGATACTTGT 56050210 >seq11 Length=4257874 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| ||||| |||||| || || ||||||||||| | ||||| |||||||| || Sbjct 922450 TTGTCAATGGCAGACACATTGAGGATGCCATTGGCATCAATGTCAAAGGTGACTTCGATC 922391 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || ||||| || | ||||||| ||||||||| ||| | ||| | ||||| ||| Sbjct 922390 TGTGGGACACCCCGAGGAGCAGGGGGGATCCCTGTCAACTCAAACTTGCCCAGCAAGTTA 922331 Query 517370 TTATCTTTAGT 517380 || ||||| || Sbjct 922330 TTGTCTTTGGT 922320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780501982390642