Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 298 7e-76 seq11 168 8e-37 seq7 159 4e-34 >seq1 Length=263920458 Score = 298 bits (330), Expect = 7e-76 Identities = 798/1207 (66%), Gaps = 22/1207 (2%) Strand=Plus/Plus Query 6953 CCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTT-- 7010 ||||||||||| |||| |||||| | ||| | |||||| || ||| ||| | ||| Sbjct 1381640 CCAAGAGACAGTGGTGCCACGTCAAGGAGCAGCAGGTCCTGTACA--TTCTCTGACTTGT 1381697 Query 7011 CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAA 7070 ||||| | | |||||| || || |||| ||||| || || ||||| |||||||| || | Sbjct 1381698 CACCCATCAGGATGGCCGCCTGTACCGCAGCCCCATAGGCCACCGCTTCATCGGGATTGA 1381757 Query 7071 TCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGA 7130 | |||| || || ||||| || ||||| | || | || | || || || || | Sbjct 1381758 TGCTTTTGTTGAGCTCTTTGCCATTAAAGAAGTCTTGCAGCAGCTTCTGGATCTTAGGAA 1381817 Query 7131 TTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGT 7190 | || || || || || || | || || ||||| | | ||| || | ||| | | Sbjct 1381818 TGCGAGTGGAGCCGCCAACAAGCACAATCTCATTGATCTGGCCTTTGTCTAGCTTGGCAT 1381877 Query 7191 CTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCT 7250 | || || | || || || || |||| ||||| | ||| || |||| Sbjct 1381878 CACGGAGGGCCTTCTCCACTGGCTCCAAGGTGCCGCGGAAGAGGTCGGCGTTGAGCTCCT 1381937 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 |||| || || ||||| |||||||||||||| || | ||| ||| | || || || || | Sbjct 1381938 CAAAGCGAGCCCGGGTGATGGATGTATAGAAGTCGATGCCATCGAACAAGGAGTCGATCT 1381997 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | |||| | || | | || | || ||||| || | ||| || || || || | Sbjct 1381998 CGATGGAGGCCTGGGTGGAGGAGCTGAGGGTGCGCTTGGCCCTCTCGCAGGCTGTGCGCA 1382057 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430 || || | ||| ||| ||| || | || || || || || || || ||||| | Sbjct 1382058 GCCGCCGGACGGCCCGCTTGTTGCCAGCGATGTCGCGTTTGTGCTTGCGCTTGAACTCCT 1382117 Query 7431 CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 | ||||| | | | | ||||| || || || |||||||| || || || | Sbjct 1382118 CCACAAAGTGGCTCACCATGCGGTTGTCGAAGTCCTCGCCTCCCAAGTGGGTGTCACCAG 1382177 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 | || | || || |||||||| || |||| ||| | || | || ||||| || || | Sbjct 1382178 CCGTGGACTTCACCTCAAAGATGCCATCTTCGATGGTCAAGATGGAGACATCGAAGGTGC 1382237 Query 7551 CACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT---TG---TTCTTATCGA 7604 |||| |||||||| || ||||| || ||| | ||| || | || ||||| || | Sbjct 1382238 CACCGCCCAGGTCGAAGATGAGGACATTCTTCTCGCCGGCCCCACTGCCTTTCTTGTCCA 1382297 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 | || || ||||| || || || || || |||||||| || |||||| || ||||||| Sbjct 1382298 GGCCATAGGCGATGGCAGCAGCTGTGGGCTCATTAATGATGCGAAGAACATTGAGGCCAG 1382357 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCG 7724 || || | ||||| || || ||||| || || || || || || || ||||| || | Sbjct 1382358 TGATGGTGCCGGCATCCTTAGTGGCTTGGCGCTGGGAGTCATTGAAATACGCCGGCACAG 1382417 Query 7725 TTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGG 7784 | | ||| ||| | |||||| ||||| || | || ||||| || ||||| |||| Sbjct 1382418 TGATGACGGCGCTCTGGACTTTGCGGCCGAGGTAAGCCTCTGCGATCTCCTTCATCTTGG 1382477 Query 7785 TAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGTTTCGT-TTCACCGTTAAAATC 7842 | || ||||| || || ||||| || | | || | || | | ||| || || | || Sbjct 1382478 TCAGCACCATGGAGGAGATCTCCTCTG--GAAAGAAGGTCTTGAGTTCGCCCTTGTACTC 1382535 Query 7843 AACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCAT 7902 || | | |||| || ||| || || || || | | ||| | ||||| Sbjct 1382536 CACCTGGACTTTGGGCTTC-CCG--GCTTCGCTGACCACGCGGAAAGGCCAGTGCTTCAT 1382592 Query 7903 ATCGTCTTGGACCTGTTGG-TCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAA 7961 || || ||| || | ||| ||||| | ||||| || ||||| ||||| || | Sbjct 1382593 GTCAGACTGCACC-GTGGCATCCTCGAACTTGCGCCCGATGAGGCGCTTGGCATCGAAGA 1382651 Query 7962 CTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCAT 8021 ||||| |||||||||||||| ||||||||| || ||||||||||| || || || Sbjct 1382652 TGGTGTTGTTGGGGTTCATGGCCACTTGGTTCTTGGCTGCGTCCCCGATGAGGCGCTC-- 1382709 Query 8022 TATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAA 8081 | || || || || || || ||| || || || || ||||||||||| || || | Sbjct 1382710 -GGTGTCAGTGAAGGCCACATAGCTTGGCGTGGTGCGGTTGCCTTGGTCGTTGGCGATGA 1382768 Query 8082 TTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATAC 8141 | || || | | || |||| || ||||| || ||||| || || || || || | Sbjct 1382769 TCTCCACCTTCCCATGCTGGAAGACTCCCACGCAGGAGTACGTGGTGCCCAAGTCGATGC 1382828 Query 8142 CGATTGC 8148 | || || Sbjct 1382829 CAATCGC 1382835 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| || ||||| ||||||||||| || || |||||||| || ||||| ||||||||||| Sbjct 148002262 ATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTCCAGTGAGATATTCTCCAT 148002321 Query 115122 AAAATCAAAGGGATT 115136 || ||||| ||||| Sbjct 148002322 GAAGTCAAACGGATT 148002336 >seq11 Length=4257874 Score = 168 bits (186), Expect = 8e-37 Identities = 363/540 (67%), Gaps = 2/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || ||||| ||||| ||||| || | || || || ||| | ||||| || Sbjct 920185 GCTCCGTAAGCCACCGCTTCATCAGGGTTGATGCTCTTGTTGAGCTCTCTGCCGTTGAAG 920126 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | ||| || || || || || || || || || || | || || Sbjct 920125 AAGTCCTGCAGAAGCTTTTGGATCTTGGGAATACGGGTTGAGCCCCCCACGAGCACAATG 920066 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | ||||| || | ||| | || || | | ||| || ||||| |||| Sbjct 920065 TCGTGCACCTGGGATTTGTCCAGCTTGGCATCGCGTAAGGCTTTCTCTACAGGCTCCAAG 920006 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||| | ||| | |||||| ||||| || || ||||| ||||| || ||| Sbjct 920005 GTGCCCCGGAAAAGGTCGGCATTCAGTTCTTCAAAGCGGGCTCGGGTGATGGAGGTGTAG 919946 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| ||| ||||| | || || || || |||| | || | | || | Sbjct 919945 AAGTCAATGCCCTCGTAGAGGGAGTCTATCTCGATGGAGGCCTGGGTGGAGGAGCTGAGG 919886 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || |||||||||||||| || | || || | || ||| ||| | | Sbjct 919885 GTGCGCTTGGCCCGCTCACACGCCGTGCGCAGGCGCCGGACCGCCCGCTTGTTGTCTGTG 919826 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCT-TCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||||| || || || ||||||||| || | ||||| | | | ||| Sbjct 919825 ATGTCCTTCTTGTGCTTGCGCTTAAACTCTGACACA-AAGTGGTTCACCATGCGGTTATC 919767 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||||| || || |||||||| || || || ||||| | || || |||||||| || | Sbjct 919766 AAAATCCTCGCCTCCCAAGTGAGTGTCTCCAGCGGTTGACTTAACCTCAAAGATGCCATC 919707 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||||| | | | || |||||||| || ||||| ||||||||||| ||||| || || Sbjct 919706 TTCAATGGTCAGGATGGACACATCAAAGGTGCCACCGCCCAGGTCAAAGATGAGGACATT 919647 >seq7 Length=7025928 Score = 159 bits (176), Expect = 4e-34 Identities = 357/533 (67%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || ||||| || || || || ||||| || | ||||| || || || || || || Sbjct 3022843 GCACCATATGCAACTGCTTCGTCCGGGTTGATGCTCTTATTGAGCTCCTTGCCATTGAAG 3022902 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | ||| || || |||||||| || || || || |||| || || Sbjct 3022903 AAGTCCTGGAGCAGCTTTTGGATCTTGGGGATTCGGGTGGACCCGCCAACCAGCACAATG 3022962 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| || | |||||||| | ||| | || | || | ||| || || || |||| | Sbjct 3022963 TCATGGACCTGAGATTTATCCAGCTTGGCATCCCTCAGGGCTTTCTCCACTGGATCCAGA 3023022 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||||||| ||| ||||| || || || | ||| || || || ||| Sbjct 3023023 GTGCCGCGGAACAAGTCAGCGTTCAGCTCCTCGAAGCGGGCCCTGGTGATCGAAGTGTAG 3023082 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || |||||| | | || | | || || | Sbjct 3023083 AAGTCGATGCCTTCGTAGAGGGAGTCGATCTCAATGCTGGCCTGAGTGCTGGAGGACAGG 3023142 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 3023143 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGGAGGCGGCGGACGGCGCGCTTGTTGTCGCTG 3023202 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || || ||||| || || || || ||||| || ||| | || || | | | | Sbjct 3023203 ATGTCCTTCTTGTGCTTCCGCTTGAACTCGGCAATGAAATGGTTGACCATGCGGTT---G 3023259 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | |||||||||||||| || Sbjct 3023260 TCAAAGTCTTCCCCACCCAAGTGGGTGTCGCCTGCTGTGGACTTGACTTCAAAGATGCCA 3023319 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 |||||||| | | | || || || || || || |||||||| ||||| || Sbjct 3023320 TCTTCAATGGTGAGGATGGAGACGTCGAAAGTGCCGCCACCCAGATCAAAGAT 3023372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635081536843880