Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3801 113 3e-20 seq8 104 2e-17 >seq3801 Length=8881 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | ||||| || | ||| | || |||||||| || || ||||| ||| Sbjct 4587 CCTCCCCTGAGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAA 4646 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || ||||| || || || | |||||| ||| | || Sbjct 4647 AGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGG 4706 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| || ||| |||||| | || | |||| || |||||| Sbjct 4707 ATGCCTTCTTTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 4766 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||||||||| || | |||||||| || |||||||| Sbjct 4767 TCGAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || || | ||||| ||| |||||||| ||||| ||||| ||| Sbjct 5499 CCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 5558 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || |||||||| ||||| || || | | ||||||||| | || Sbjct 5559 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5618 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| ||||| ||||| || || || | |||| | ||| | Sbjct 5619 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTTGGCTCCA 5676 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | || ||||| || || || | |||||||||||||||||||| || Sbjct 5677 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 5728 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||| | ||| ||||||||| ||||| ||||| || || | || |||| || Sbjct 4377 ACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCA 4436 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | || || |||||| |||| | ||||| ||||| Sbjct 4437 AGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCTTGG 4496 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||| || || || || | || | | || || |||| || ||||||| Sbjct 4497 ATTTTTGCTTTCAC--ATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGGTTT 4554 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || |||||||||||||| ||||| Sbjct 4555 TTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || || | ||| | || |||||||| |||||||| || || Sbjct 5043 CCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGAC 5102 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || || || || ||||| || || | | ||||||||| | || Sbjct 5103 AGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGG 5162 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| |||||| | | || | |||| || || || Sbjct 5163 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACC 5222 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || || || |||||||||||||||||||| Sbjct 5223 TCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| ||||| | || |||| || Sbjct 3693 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCG 3752 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | ||||||||| | || | || |||||||| Sbjct 3753 AGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 3812 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||| || ||| | || | || | || ||| || |||| || ||||| || Sbjct 3813 ATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTCTTG 3872 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||||||||| |||||||| Sbjct 3873 CCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || || | ||| | ||| ||| ||||| |||||||| || || Sbjct 4131 CCTCCCCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGAC 4190 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || ||||| || || | | |||||| ||| | || Sbjct 4191 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGG 4250 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| || ||| || || || || || | |||| | || | Sbjct 4251 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAAC--ATTCTCAATGGTGTCACTTGGTTCCA 4308 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 4309 CTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| || || ||||| || || | || |||| || ||||| || ||||| || Sbjct 3938 TTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAA 3997 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | || || ||||| || || |||||| Sbjct 3998 AATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTT 4057 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| | ||| || |||| || ||||||||||| || | || || || Sbjct 4058 CTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGAC 4117 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 4118 AAAGATCTGCAT 4129 >seq8 Length=3271537 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | |||||||| ||| | ||| || ||||| || || ||||| ||| Sbjct 1336507 CCACCCCTCAGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAA 1336448 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || |||||||| || || | |||||||| |||| Sbjct 1336447 AGAGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 1336388 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || || || ||||| || || || || || | || | || ||| | Sbjct 1336387 ATGCCTTCTTTCTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCA 1336330 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || | ||| ||||| ||||| || || ||||||||||| | |||||| ||| Sbjct 1336329 CCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCATTTTC 1336277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324608053060296