Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq4 91.5 2e-13 >seq1 Length=263920458 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| |||||| || || || | ||||||||||| |||| |||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||||| | Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || ||| || Sbjct 148006131 CTACTACTCGTTCCCC 148006146 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCA---TTAGAATTCATTACTCCCAT 18668 ||| ||||| ||||||| | |||||||| ||| || || || ||| |||||||| Sbjct 148002199 TTAGAAATCTGCATCCAAGGTGAAAGAATTGTCTACAGCTTTTGA---CATCACTCCCAT 148002255 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | |||||||| | || | |||||||||||||||||||| || || | ||| ||| Sbjct 148002256 CCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTCCAGTGAGATATT 148002315 Query 18729 TTCCATAAAATCAAATGGATT 18749 ||||| || ||||| ||||| Sbjct 148002316 CTCCATGAAGTCAAACGGATT 148002336 >seq4 Length=156502444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18994 CTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAAT 19053 || || | |||||| || || || | ||| ||||||||||||||||| || | ||| || Sbjct 14021228 CTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCTTGAGCCAAAAG 14021169 Query 19054 ATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTT 19113 |||| ||||| | ||||| ||||| || ||||| || | ||||||||||| | ||| Sbjct 14021168 ATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAGCAACCACTCTC 14021109 Query 19114 TCTCC 19118 || || Sbjct 14021108 TCCCC 14021104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562063430793480