Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3801 123 2e-22 seq7 113 4e-19 seq11 104 2e-16 seq1 95.1 1e-13 >seq3801 Length=8881 Score = 123 bits (136), Expect = 2e-22 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| | || ||||| || ||||| ||| | | ||| |||||||| || | || Sbjct 4592 CCTGAGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGG--ATATTGTAGTCTGAAAGG 4649 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||||||| || || ||||| ||||| || ||||||||||| ||||| || Sbjct 4650 GTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATG 4709 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 |||||||| ||||| ||||| || || |||||| || ||| || | | |||| Sbjct 4710 CCTTCTTTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCG 4769 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||| ||||| | || || |||||||| ||||| Sbjct 4770 AGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 122 bits (134), Expect = 7e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 || |||||| ||||||||||| || || |||||| |||||||| || | ||||| Sbjct 3908 CCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGT 3967 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||||||| || || ||||| ||||| | ||| ||||| || |||||||| || Sbjct 3968 GCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCC 4027 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 |||||| ||||| ||||| || || |||||| || ||| | | |||||| Sbjct 4028 TTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAG 4087 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||||| ||||| | ||||| || || || ||||| Sbjct 4088 AGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 107 bits (118), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 || |||||| || || | || || || |||||| || ||||| || | ||||| Sbjct 4364 CCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGT 4423 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||||||| ||||| ||||||||||| | ||| || || || || || || || Sbjct 4424 ACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCC 4483 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||||| ||||| |||||| ||| || |||||| || || | || | || ||||| Sbjct 4484 CTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTC-GCTTGGTTCCACTTCGA 4542 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| | ||||| ||||| || || || || || |||||||| Sbjct 4543 GAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| | ||| || ||||| || || || ||| || || || ||||| | ||||| Sbjct 4136 CCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGT 4195 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||||||| || || ||||| ||||| | ||||||||||| ||||| || || Sbjct 4196 GCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCC 4255 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||||| ||||| ||||| || || |||||| || ||| | || | || ||||| Sbjct 4256 CTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATGGTGTCACT-TGGTTCCACTTCGA 4314 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| | || || ||||| || || || || || || ||||| Sbjct 4315 GAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| | ||| || ||||| || ||||| ||| | | ||| || || ||||| | ||| Sbjct 5048 CCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGG--ATGTTATAATCTGACAGA 5105 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||||||||| || ||||| ||||| | || ||||| || || || || Sbjct 5106 GTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATG 5165 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || ||||| ||||| || || || || ||||| || ||| || | | || || Sbjct 5166 CCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTG-GGTTCCACCTC 5224 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||| ||||| ||||| || || || || || || ||||| Sbjct 5225 TAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 >seq7 Length=7025928 Score = 113 bits (124), Expect = 4e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||||| |||| || | || || ||||| || || |||||||| || || || ||||| Sbjct 3023706 GTTACGAATGCTGTGGTCACAGTCCCAGCCTACTTCAATGACTCCCAGCGCCAGGCTACA 3023647 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| |||||||| || ||||| || || || || || ||||| |||||| Sbjct 3023646 AAAGATGCGGGAACCATTGCTGGTCTCAATGTGCTCCGGATCATTAACGAACCAACTGCT 3023587 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| |||| ||||| | |||||| Sbjct 3023586 GCTGCTATTGCTTATGGCTTAGATAAA 3023560 >seq11 Length=4257874 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| || || || ||||| || || || || || || | || ||||| Sbjct 918287 GTTACCAATGCAGTCATCACAGTCCCAGCTTACTTCAACGATTCCCAGAGACAGGCTACC 918346 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || |||||||| ||||| || || ||||| ||||| || ||||||||||| || ||| Sbjct 918347 AAGGATGCTGGTACCATTGCAGGCCTCAATGTCCTTCGCATCATCAATGAACCCACAGCT 918406 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || |||||| Sbjct 918407 GCTGCCATAGCCTATGGGCTGGATAAA 918433 >seq1 Length=263920458 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || ||||| |||||||| || || ||||| ||||| ||||| Sbjct 1382427 GCCGTCATCACTGTGCCGGCGTATTTCAATGACTCCCAGCGCCAAGCCACTAAGGATGCC 1382368 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||| || ||||||||||| || || ||||| || || |||||||| | Sbjct 1382367 GGCACCATCACTGGCCTCAATGTTCTTCGCATCATTAATGAGCCCACAGCTGCTGCCATC 1382308 Query 550520 GCATATGGACTTGATAA 550536 || ||||| || || || Sbjct 1382307 GCCTATGGCCTGGACAA 1382291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028954524718930