Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 >seq1 Length=263920458 Score = 116 bits (128), Expect = 4e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| |||||| || || || | ||| ||||| | ||||| ||||| Sbjct 148006013 TCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTTTC 148006072 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| | ||||||||| || |||||||| || ||||| ||||| ||||| ||| Sbjct 148006073 AACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCT 148006132 Query 37320 AC 37321 || Sbjct 148006133 AC 148006134 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | || ||||||||||| |||||||| |||||||| || || || ||||| || || Sbjct 148009348 TCTTTGATGTAAGTATCAATAAGTAAACTGTACATTTCCGAATGGATGTTTTCCATGGCA 148009407 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||| ||||| | |||||| Sbjct 148009408 ATCTGGAAGCCATAGAAACAGCGAGCTTC 148009436 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||||||||| || || |||| || ||||| || || ||||| Sbjct 148002244 CATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTC 148002303 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| ||||| ||||| || ||||| ||||| Sbjct 148002304 CAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592268992630280