Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3801 136 3e-27 seq8 82.4 6e-11 >seq3801 Length=8881 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| || || |||||||| || |||||||| |||| | Sbjct 3903 CCTCCCCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAG 3962 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||| || || || ||||| | ||| || || || ||| Sbjct 3963 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGA 4022 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| ||||| || || | || | |||||| || || ||| Sbjct 4023 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACT 4082 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 4083 TCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCATG 4130 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | || | ||||| || ||||| |||||||| || |||||||| |||| | Sbjct 4815 CCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAG 4874 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||| || || || ||||| | || ||||| || || Sbjct 4875 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGG 4934 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || || || |||| | |||||| | |||||| Sbjct 4935 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACC 4994 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || || ||||| ||||| ||||||||| Sbjct 4995 TCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCATG 5042 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | || | || | ||| || || || ||||| || || |||||||| | | Sbjct 5271 CCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAG 5330 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | || || || || || ||||| | ||| || || || || Sbjct 5331 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5390 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || || || |||| | |||||| | ||| || Sbjct 5391 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACC 5450 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || || ||||| || || |||||||| Sbjct 5451 TCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || |||||||| || | | || | | |||| || | ||| Sbjct 4611 TGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCAAGCTGC 4670 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | | || ||||| || || ||||||||||| ||||| ||||| Sbjct 4671 TTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTC 4730 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | || ||||| ||||||| ||||| || || Sbjct 4731 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTC 4790 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 4791 AAGGTCTTCACGAAAATCTGCATG 4814 >seq8 Length=3271537 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || ||||| | || | ||| || || || || |||||||| || | | ||| | | || Sbjct 1336495 CGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA 1336436 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| ||||| || ||||| || | | ||| || || ||||| ||||||||||| Sbjct 1336435 TCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCTTTC 1336376 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || || || ||| | || | ||||| | ||||| || || |||| Sbjct 1336375 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 1336316 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || ||||| | |||||| Sbjct 1336315 GTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCAT 1336281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396247214995149