Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1351 140 6e-28 seq514 120 6e-22 seq160 114 2e-20 >seq1351 Length=41927 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| || |||||||| | || || | || ||||| || ||| Sbjct 3428 AGCACCTTCTGCTTGAGCTGCGCCACCTGCTGGCGGAGGAGCGAGGCGGTGGAGGCCAGC 3369 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| || ||||||||||| || | |||||| ||||| Sbjct 3368 TCGGTGTTCTGGCTCTTGAGGCTCTTGACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGC 3309 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | ||| ||||| |||| ||| || | |||||||||||| | ||| || ||||||||| Sbjct 3308 TTCCTCCGCCGGCACTTGGAGGCCGCGATGCGGTTCCGGAGCCGCTTCCGCTCCGCCTTG 3249 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| |||||| ||||||||||| || || Sbjct 3248 ATGCGCTCCTGGCTGTCCATGTCGATGGGCGA 3217 >seq514 Length=269024 Score = 120 bits (132), Expect = 6e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||| ||| Sbjct 181441 GTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGG 181382 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || || |||||||||||||| || | |||||||| |||| Sbjct 181381 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCCGGTCTCAGTCTGG 181322 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG 213691 ||| | | || | |||||| | | |||||||||||| || Sbjct 181321 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTGACCACACG 181278 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| |||||||||| ||| ||||| ||| |||||||||| || | ||| || Sbjct 175473 CTTCATGAAGAGGTCCGGGATCCAGAGCGCAAAGAAGAGGTCCCTGGCCCGCTGCTCCTC 175414 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || | ||| || ||| || || || ||||||||||| |||||| ||||| | Sbjct 175413 CTTCCCGGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCAAAGTGCCAAGGCTCGAG 175354 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTGC 213966 ||||||||||||||| ||||| | || || Sbjct 175353 GTAGATGGCAAAGGCCCCCGGTCGCTGGC 175325 Score = 100 bits (110), Expect = 5e-16 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| | ||||| |||| ||| | |||||| || ||||||||| || | | Sbjct 187572 CCTTTGCTGAGGGGGCATCCCTCGTAGGTCTCGTAGGGTCCGCACTCCTTGGCGAGGTTG 187513 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| ||| || || ||||||||||| ||||| |||| | |||||| || | Sbjct 187512 CAGCTGGCCTCCAGCGCGGCATAGTAGATGGTCTCAAAGATCTGCTGGTTGAGGAGCTGG 187453 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | |||||| | ||| | ||| | || ||||| ||||| ||| Sbjct 187452 GCCTCGGGGCTCTCGAAGGGGAAGCGCATCAGGATGAAGGCGTCCGCCAGGCCCTGCACC 187393 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTT--AGACTT 213355 ||||| || ||||| | ||| | | ||| |||||| Sbjct 187392 CCGATCCCAATGGGACGGTGCCGCTTGTTGGAGACTT 187356 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || ||| || || || || || ||||||| ||| | ||| ||||||||||| || Sbjct 191148 TACCTGAAACTCTCCAGAAAGGACCCTCCGGGTGTAGATGTTGCTCGTGTAGGGCTCTAT 191089 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||||||||| ||||| ||||| || ||| || |||||||| || ||||||||||| Sbjct 191088 GGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAAGCCGTGGGCATCGGGGCCACCAGGAG 191029 Query 213035 ACTGTTCCTCACTCCGTGC 213053 ||||||| || |||||| Sbjct 191028 GCTGTTCCGGACCCCGTGC 191010 >seq160 Length=1224583 Score = 114 bits (126), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 241426 TTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTC 241485 || ||| || ||||||||| | || || | | ||||| || ||| | ||||| | Sbjct 867008 TTGGAGCTGCGCCACCTGGGCGCGGAGGAGGCTGGCGGTGGCGGCCAGCTCCGCGTTCTG 866949 Query 241486 AGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCG 241545 ||| ||| ||||||||||||||||||| || |||||||| ||||| || | ||| || Sbjct 866948 CCCCTTCAGCGCCTTCACTTTCTCCTCCAGGCGGGCGATGCGCTCCAGCTTCCTCCGCCG 866889 Query 241546 GCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTG 241605 |||||| | ||| || | ||||| ||||| | ||| || || ||||||| || ||||| Sbjct 866888 GCATTTAGAGGCCGCGATACGGTTGCGGAGCCGCTTGCGCTCGGCCTTGAGCCGCTCCTG 866829 Query 241606 G 241606 | Sbjct 866828 G 866828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931457613658880