Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 6e-15 seq3801 87.8 1e-11 >seq7 Length=7025928 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || || ||||| || || || || || || ||||||| Sbjct 3023699 ATGCTGTGGTCACAGTCCCAGCCTACTTCAATGACTCCCAGCGCCAGGCTACAAAAGATG 3023640 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 |||||| ||||| ||||| ||||| | || || ||||| |||||||| || || || Sbjct 3023639 CGGGAACCATTGCTGGTCTCAATGTGCTCCGGATCATTAACGAACCAACTGCTGCTGCTA 3023580 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | ||||| || Sbjct 3023579 TTGCTTATGGCTTAGATAAAAA 3023558 >seq3801 Length=8881 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| | ||||| | | ||||||||||||||| || || ||||| | | || Sbjct 5091 TTATAATCTGACAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGC 5150 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || || || || |||||||| ||||| ||||| ||||||||| ||| Sbjct 5151 TGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCA 5210 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| || || || ||||| || || || || Sbjct 5211 CTGGGTTCCACCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTG 5266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267902227940636