Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq249 125 8e-24 >seq2 Length=199619895 Score = 185 bits (204), Expect = 1e-41 Identities = 582/899 (65%), Gaps = 6/899 (1%) Strand=Plus/Plus Query 160137 ATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAA 160196 ||||||| || |||||| || || || || || || || ||||| | || ||||| Sbjct 46165361 ATCCAGTTCAAGTCTCCCACTCCAAAGACACACACTGAGCGGATGTGTATCCCACTGCAA 46165420 Query 160197 GGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTG 160256 || || ||| | || || || | ||| || || || |||| |||||||| ||||||||| Sbjct 46165421 GGTGGATACGGGGCACCCTTTGACACATCCCCCTCAAAGTAATGCCACTTAACAAACCTG 46165480 Query 160257 GCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACG 160316 || | || | |||||| ||| || ||||| | | || || || || ||||| Sbjct 46165481 GCCAGAGCGTTCATGTCTGAGACATCATATTTATTACTGGCGGAGACAGCTCCAGGAACT 46165540 Query 160317 CCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGAC 160376 | || || ||||| || || ||||||| || ||| || || ||||||||||| |||| | Sbjct 46165541 TCAGGAATTCGCTGAAGAGTAGCCCACAAGTATTCATCAGGACTGTACGTGTCTTTAGCC 46165600 Query 160377 CATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTC 160436 ||||| || || | ||| ||| | || || | ||| | ||| | Sbjct 46165601 CATTCTATAAAAGCAAGGATGTTGGTGTTCTCCAATACATATTCAACAAACCTCCTGCTA 46165660 Query 160437 ACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCC 160496 || |||||||| || ||||| ||||| || ||| | | ||| || | ||||| Sbjct 46165661 ACAACAAAGTAGGCACTGCCAGAGAAAATGGGTGTATTGAGAGGTGGATGCTGCTTGTCT 46165720 Query 160497 TGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATC 160556 || | || ||| || | | | | || |||| ||||||| ||| | Sbjct 46165721 ATTCCCATATTCTTTACCTTACCATCAATAACTTCATGATGCTTTTTCCACCGTACCTCC 46165780 Query 160557 TTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGC 160616 |||| | ||||| || || || | ||| || |||| | ||| | ||||||| | Sbjct 46165781 TTGTTTGAAGGCATTTTCTCAGTTTCCAAACTATTTTCACCTTTGAGGGCCTTCAGCTTC 46165840 Query 160617 TTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTAC 160676 | | || || |||| ||||||| || || || |||| || | ||| |||| |||| Sbjct 46165841 TCTATTATTTCCTGGTTAGTCTTGATAGGGAAATCCATACCACAAAGGTTGATCAGGTAC 46165900 Query 160677 TTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 ||||| ||||| | | || ||||| ||||||| || | || || ||||| | | Sbjct 46165901 TTCCAGTTCGCACCCCTCCTGTAGAGGTCTTTCATGCAGTTGAGGTCAGCTTGCACTCTG 46165960 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 ||||| || || ||||| || | || |||| ||||| | ||| | ||| | || || Sbjct 46165961 CTCCACGAGGCATACACAACACTTTCCAGTTGGCTGGCAATAAAAATGTTGCCAAAGCAT 46166020 Query 160797 GACACGATTCC---CACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGC 160853 || | || || || | ||||| | || || | | | ||| || || || Sbjct 46166021 GAAGCAATCCCTTTAACTGCAGCCAGGA--AAGAT-TCAGGAGACTTCTTATCAACATGA 46166077 Query 160854 ACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATC 160913 | ||| || ||||||||| || |||||||| | | | ||| || | ||| || || Sbjct 46166078 ATGCAGTAATAGTTCTGAGGTGCATAGATGGCTCGCAAAAGCCTTTCAAGCATGTCAATT 46166137 Query 160914 TTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGAC 160973 || ||||| | || || || || || || ||||| || | ||||| ||||||| Sbjct 46166138 TTGTGATGAACTACTATTGAATAAGCAATGGGAAATTCTGCTTCCTCTTTGCTCAGGGGT 46166197 Query 160974 CCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | | | || || || |||| ||||| | ||||||| ||| |||| || || Sbjct 46166198 TCCATAATATATTTCCGTCTCTTAATAAAGGAGGCACAATCTGTTGTCTTGTTAATGTA 46166256 >seq249 Length=841488 Score = 125 bits (138), Expect = 8e-24 Identities = 237/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 160041 GATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCG 160100 ||| ||| ||||| | ||| |||| |||| | | || | |||||| | ||| Sbjct 270321 GATTTGTAACGCAGGTATTCTTCCAAGCATTCAATGACGGAATTGTCAACTTGGGAGTCA 270262 Query 160101 AATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCG 160160 ||||| || || || |||||||| ||| || |||||||| | || || | ||| Sbjct 270261 AATTTGTTGGCAAAGAGATGGTGCTGGTTG---AGCATCCAGTGGAGATCACCCGCCCCA 270205 Query 160161 AACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCC 160220 | || |||| || |||| || || |||||||||||||| | || || || | Sbjct 270204 TAGGTACATACGGCCCGCCTGTGGACCCCCGTGCAAGGCGGGTACGGGGCCCCCTTGGTG 270145 Query 160221 ACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTG 160280 ||||| || ||| ||| ||||||||| | ||| || || || | |||||| | | Sbjct 270144 ACGTCCCCCTCGGTGTAGGACCACTTCACCAGCCTCGCGATGGCGTTCATGTCCGTCAGG 270085 Query 160281 TCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCC 160340 || | ||| | | ||| || | || || || || ||||| || || || |||||| Sbjct 270084 TCAAACTTGCTGTTGAAGGGGACCCCGCCTGGCACCCCCGGCATGCGATGCAGCGTGGCC 270025 Query 160341 CACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAAC 160388 || | ||| |||||||| ||||| ||||| || ||||| || |||||| Sbjct 270024 CAGATGTGCTCGTCGGGACTGTAGGTGTCTTTGGACCACTCGATGAAC 269977 Score = 105 bits (116), Expect = 8e-18 Identities = 231/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678 ||||||||| ||| ||||||| || | |||||| ||||| ||| | | ||| Sbjct 269749 GACGATCTCCGCGTTGGTCTTGATGGGCAGGTCGGTCCCGCAGGTGTTGAGGAGGTAGCG 269690 Query 160679 CCATTT---CGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCG 160735 ||| || || ||| || | |||||| |||||| || | || || || || | Sbjct 269689 CCACTTGACCGGGCTTCGGA---GAAGGTCCTCCATGCAGTTCAGGTCGGCTTGGACCCT 269633 Query 160736 GCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACA 160795 | ||||||| || ||||| || ||| | || ||||| |||||||| | || || Sbjct 269632 GTTCCAGGAGGCATACACCACCCGCTCCTGCTTGGAGGCCAGGAAGACGTTCCCAAAGCA 269573 Query 160796 CGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCAC 160855 |||||||| | | ||||| || | | ||| ||| || || || Sbjct 269572 GGACACGATCCTCCGAACCGCTTCTTGCAAAGGTTGCGGAGACTTGGCGTCTACATGGAC 269513 Query 160856 GCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTT 160915 ||| || | |||||| || |||||||||||||| | || || ||| |||||||| | ||| Sbjct 269512 GCAGTAGACGTTCTGCGGGGCGTAGATGGCCCTCAACAGCCGCTCAAACATCTCCACCTT 269453 Query 160916 ATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | |||| |||||| ||||| || || || ||||| |||||| Sbjct 269452 GTCGTGGAGCACGATGGAGTACGCGATGGGGAACTCTTCCTCCTC 269408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577172611195320