Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3801 96.9 6e-15 >seq3801 Length=8881 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || |||| ||||| || | ||| | ||||| || || || || || | || || Sbjct 4368 AGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGG 4427 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || || | ||||| || |||||||| |||||||||||||| || || || || ||| Sbjct 4428 CCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCT 4487 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| ||||| ||| ||||| || || || | ||| ||||| ||||| Sbjct 4488 TTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTG 4547 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| ||||| | || || | || || ||||| Sbjct 4548 ATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||| | || || | || || | ||| || || || ||||| || ||| Sbjct 5088 ATGTTATAATCTGACAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTC 5147 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || || || ||||| ||||| || || || || || ||||| Sbjct 5148 TGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTG 5207 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || | ||| || ||||||||||||||||| ||||| | || || | || |||||| Sbjct 5208 TCACTGGGTTCCACCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGC 5267 Query 172068 AT 172069 || Sbjct 5268 AT 5269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905062944210600