Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq221 170 2e-36 seq287 165 1e-34 seq73 152 6e-31 seq5 149 8e-30 seq514 104 3e-16 seq481 87.8 2e-11 >seq221 Length=1009300 Score = 170 bits (188), Expect = 2e-36 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| |||||||||||||||||||| | | || Sbjct 335516 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGA 335457 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 335456 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 335397 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 335396 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 335337 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 335336 GCACCTGCTTCAGCACCTTGTAGA 335313 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| ||||| |||||||||||||| | | || Sbjct 345171 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCCGTCTGGATCTCGCGAGAGGTGA 345112 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 345111 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 345052 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 345051 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 344992 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 344991 GCACCTGCTTCAGCACCTTGTAGA 344968 >seq287 Length=650225 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| |||||||||||||||||||| | | || Sbjct 243336 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGA 243277 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 243276 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 243217 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 243216 TGTCATTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCGGGGT 243157 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 243156 GCACCTGCTTCAGCACCTTGTAGA 243133 Score = 165 bits (182), Expect = 1e-34 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| |||||||||||||||||||| | | || Sbjct 265955 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGA 266014 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 266015 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 266074 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 266075 TGTCATTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 266134 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 266135 GCACCTGCTTCAGCACCTTGTAGA 266158 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| |||||||||||||||||||| | | || Sbjct 314985 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGA 315044 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 315045 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 315104 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 315105 TGTCATTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 315164 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 ||||||| || ||||||||||||| Sbjct 315165 GCACCTGTTTCAGCACCTTGTAGA 315188 Score = 152 bits (168), Expect = 6e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| |||||||||||||||||||| | | || Sbjct 297922 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGA 297981 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 297982 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGA 298041 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | |||| |||||| || ||| |||| Sbjct 298042 TGTCATTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCAGTGTCCGGGT 298101 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 298102 GAACCTGCTTCAGCACCTTGTAGA 298125 >seq73 Length=2013901 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| |||||||||||||| || | || Sbjct 1828718 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCACGAGAAGTGA 1828659 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||||| ||||||| |||| | Sbjct 1828658 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCGCCAGCGATGCGCTCGAAGA 1828599 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || ||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1828598 TGTCATTCACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCTGTGTCGGGGT 1828539 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1828538 GTACCTGCTTCAGCACCTTGTA 1828517 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||| || ||||| |||||||| | | || Sbjct 1811600 GCTTGGCCAGCTCCCCCGGCAGCAGGAGGCGCACCGCAGTCTGAATCTCGCGAGAGGTGA 1811659 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||| ||| ||||||| ||||||| |||| | Sbjct 1811660 TGGTAGAGCGCTTGTTGTAGTGGGCCAAGCGGGAGGCCTCGCCAGCGATGCGCTCGAAGA 1811719 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1811720 TGTCATTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCTGTGTCGGGGT 1811779 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1811780 GCACCTGCTTCAGCACCTTGTA 1811801 >seq5 Length=150641573 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||||| ||| | || ||||| ||||||||||||||||| | | || Sbjct 27645713 GCTTGGCCAACTCGCCCGGCAGCAAGAGCCGCACCGCGGTCTGGATCTCGCGAGAGGTGA 27645772 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 27645773 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGTGGCCTCCCCGGCGATGCGCTCGAAGA 27645832 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 27645833 CGTCGTTGACGAAAGAGTTCATGATACTCATGGCCTTGGAGGAGATGCCCGTGTCCGGGT 27645892 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 27645893 GGACCTGCTTCAGCACTTTGTA 27645914 >seq514 Length=269024 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||||||||| |||||| || | | || |||||||||||||||||| | || Sbjct 181432 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTC 181373 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| ||||||||| || | ||||||||| |||| | | ||| | Sbjct 181372 CTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAGTGCCGGTCTCAGTCTGGGACTCGATG 181313 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||||| ||| Sbjct 181312 ATGGCGTACCAGAGCTG 181296 Score = 102 bits (112), Expect = 1e-15 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | |||||| || ||||||||||||||||||||||| || || ||||| ||||||| Sbjct 173223 CGGCGAGGCCGATCCCTCCGGCCGACTTGGAGATGAGCGCACAGTGCTTGAGTGTGTCGT 173164 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATG 1630263 ||||||| ||||| |||| |||||||| Sbjct 173163 AGATGCCTTCGATGCTGTCGTCCTTCATG 173135 >seq481 Length=328561 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||| |||||||| ||||||||||| |||||||||| || ||| |||||| Sbjct 100778 CGTCATCTCTTTTGACGGTTCCTACGTCAACTACCGCCACTTGGCCCTGCTTTGCGACAC 100719 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| |||||||| || ||||| |||| || ||||| ||||||| Sbjct 100718 CATGACGTGCCGCGGGCACTTGATGGCCATCACTCGGCACGGAGTCAACCG 100668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106609308341869