Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3801 145 7e-30 seq6 104 2e-17 seq14 91.5 1e-13 seq8 91.5 1e-13 >seq3801 Length=8881 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || |||||||| ||| | | Sbjct 4357 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAACCAAGT 4298 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| | ||| |||||||||||||| || || ||||| ||||| Sbjct 4297 GACACCATTGAGAATGTTAAGGCGAAA-ATCCAAGACAAAGAGGGCATCCCTCCAGATCA 4239 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||| || |||||||| ||||| || ||| | | ||||||||||||| Sbjct 4238 GCAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTGTCAGATTATAA 4179 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || |||||||| || || ||| | || |||| ||| | |||||| Sbjct 4178 CATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGTTTGAGGGGAGGC 4130 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || ||||| || || |||||||| ||| | | | Sbjct 4585 ATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAGC 4526 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||| |||||||||||||| || || || || || ||| Sbjct 4525 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCATCCCGCCAGACCAA 4466 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| |||||||| |||||||| || ||| | | |||| || || ||| Sbjct 4465 CAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAAC 4406 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||||| ||| | || | || |||||| Sbjct 4405 ATCCAGAAAGAATCCACTCTCCACTTAGTGCTACGTCTCCGGGGAGGC 4358 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| ||||| || || || ||| ||| Sbjct 5269 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGT 5210 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||||||||| || || || || || || Sbjct 5209 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 5150 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || |||||||| || || || ||| | | |||||||||||||| Sbjct 5149 CAGAGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAGATTATAAC 5090 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || ||| | ||| |||| ||| | |||||| Sbjct 5089 ATCCAGAAAGAGTCAACCCTCCACCTTGTGCTGCGTTTGAGGGGAGGC 5042 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || ||||| || || || || |||||||| || ||| Sbjct 3902 GATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGCCCAG 3843 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || |||| || | ||| ||||||||||| ||||| || || || || | Sbjct 3842 CGACACCATTGAGAACGTGAAGGCGAAA-ATCCAAGACAAGGAAGGCATCCCCCCAGACC 3784 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | | |||||||||||||| ||||| || ||| | | | || || || | Sbjct 3783 AGCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAAGATGGCCGCACTCTTTCCGACTACA 3724 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || ||||| || || || ||| ||||| |||| | || || ||| Sbjct 3723 ACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTCCGGGGCGGC 3674 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || || || || ||| | | Sbjct 5041 ATGCAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAGT 4982 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||||||||| || || || ||||| Sbjct 4981 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCAG 4922 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| || |||||||| ||||| || ||| | | | || || || || Sbjct 4921 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAAT 4862 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||||| ||| |||| | | |||||| Sbjct 4861 ATCCAGAAAGAATCCACCCTCCACTTAGTGCTGCGGCTCAGGGGAGGC 4814 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || || || || || || || || ||| | | | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||||||||| || || || || || Sbjct 5437 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 5378 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| |||||||| || ||| | | | |||||||| ||| Sbjct 5377 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAAC 5318 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || | ||| |||| | | |||||| Sbjct 5317 ATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCTCAGGGGAGGC 5270 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || ||||| || || |||||||| || | | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||||||||| || ||||| || || Sbjct 4069 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAAGACAAAGAAGGCATTCCTCCAGACCA 4011 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | ||||| || |||||||| ||||| || ||| Sbjct 4010 GCAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGAT 3974 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || ||||| || || |||||||| || ||| Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||||||||| || ||||| ||||| Sbjct 4753 GACACCATTGAGAACGTCAAGGCGAAA-ATCCAAGACAAAGAAGGCATCCCTCCAGATCA 4695 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | || || |||||||| ||||| || ||| | | | | ||||| || || Sbjct 4694 GCAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAA 4635 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || || || || || || || ||| Sbjct 4634 TATCCAGAAAGAGTCAACCCTCCAC 4610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || || | | Sbjct 5725 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTGGAGCCAAGT 5666 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 5665 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 5606 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| |||||||| || ||| | | | || || || ||| Sbjct 5605 CAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTCCGACTACAAC 5546 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || ||| | ||| |||| ||| | ||||| Sbjct 5545 ATCCAGAAAGAGTCCACTCTTCACCTTGTGCTGCGTTTGAGGGGAGG 5499 >seq6 Length=80741955 Score = 104 bits (114), Expect = 2e-17 Identities = 157/217 (72%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| | |||| | || || || ||| Sbjct 46145245 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACAAGTACGTTGGACGTGGAGCCCAGT 46145186 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || || ||| || || ||| ||||| ||||||||||| || |||||| | || Sbjct 46145185 GACACCGTTGAGAACATCAAGACCAAA-ATCCAGGACAAAGAAGGGATCCCTCCCAACCA 46145127 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG-AAAC-ATGTCAGATTAT 24880 | || |||||||||| || | ||||||||||| || | | || | ||||| || Sbjct 46145126 GTAGTGTCTGATCTTTGCAGGTTAGCAGCTGGAGGA--CGGGCACACTCTCTCAGACTAC 46145069 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGC 24917 || || || || || || || ||||||||||||| Sbjct 46145068 AATATCCAGAAAACGTCCACCCTCCACTTGGTGTTGC 46145032 >seq14 Length=14352415 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || ||||| ||||||||||| || |||||||| || || | | | |||||||| ||||| Sbjct 9652019 AAAATCCAGGACAAAGAAGGGATCCCTCCCGACCAGCAGCATCTAATCTTTGCAGGGAAG 9651960 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | ||||| || ||||| | || || || || || ||| Sbjct 9651959 CAGCTGGAGGATGGGCACACTCTCTCAGACTACAACATCTAGAAAGAGTCCACCCTCCAC 9651900 Query 24908 TTGGTGTTGC 24917 |||||| ||| Sbjct 9651899 TTGGTGCTGC 9651890 >seq8 Length=3271537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||| | ||| | || || || || || || || || || || || || || ||| | Sbjct 1336281 ATGCAGGTTTTTGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 1336340 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || |||||||| || || || || || Sbjct 1336341 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGAGAAAGAAGGCATCCCGCCTGACCAG 1336400 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||||||||| |||||||| ||| | | | || || || || Sbjct 1336401 CAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1336460 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || | ||| |||| |||||| || | || ||| Sbjct 1336461 ATCCAGAAGGAGTCCACCTTGCACCTGGTTTTGCGACTGAGGGGTGGC 1336508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449861287639960