Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq221 224 2e-52 seq287 219 7e-51 seq73 210 3e-48 seq5 210 3e-48 seq514 87.8 3e-11 seq1 86.0 1e-10 >seq221 Length=1009300 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 335555 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGAA 335496 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||||||||||||||| | | ||| ||| ||||||||| | Sbjct 335495 GCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 335436 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 335435 GCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 335376 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 335375 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 335316 Query 1485710 AAAC 1485713 | || Sbjct 335315 AGAC 335312 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 345210 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGAA 345151 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| |||||||||||||| | | ||| ||| ||||||||| | Sbjct 345150 GCAGGAGGCGGACGGCCGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 345091 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 345090 GCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 345031 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 345030 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 344971 Query 1485710 AAAC 1485713 | || Sbjct 344970 AGAC 344967 >seq287 Length=650225 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 243375 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGAA 243316 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||||||||||||||| | | ||| ||| ||||||||| | Sbjct 243315 GCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 243256 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||| || || || ||||||| Sbjct 243255 GCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCATTCACGAAGGAGTTCA 243196 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 243195 TGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 243136 Query 1485710 AAAC 1485713 | || Sbjct 243135 AGAC 243132 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 265916 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGAA 265975 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||||||||||||||| | | ||| ||| ||||||||| | Sbjct 265976 GCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 266035 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||| || || || ||||||| Sbjct 266036 GCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCATTCACGAAGGAGTTCA 266095 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 266096 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 266155 Query 1485710 AAAC 1485713 | || Sbjct 266156 AGAC 266159 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 314946 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGAA 315005 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||||||||||||||| | | ||| ||| ||||||||| | Sbjct 315006 GCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 315065 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||| || || || ||||||| Sbjct 315066 GCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCATTCACGAAGGAGTTCA 315125 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||||||||| || |||||||||| Sbjct 315126 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGTTTCAGCACCTTGT 315185 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 315186 AGACATAGATGGAGTA 315201 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 297883 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGAA 297942 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||||||||||||||| | | ||| ||| ||||||||| | Sbjct 297943 GCAGGAGGCGGACGGCGGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 298002 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||| || || || ||||||| Sbjct 298003 GCGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAAGATGTCATTCACGAAGGAGTTCA 298062 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||| ||||| |||||||| |||||||||| Sbjct 298063 TGATGCTCATGGCCTTGGAGGAGATACCAGTGTCCGGGTGAACCTGCTTCAGCACCTTGT 298122 Query 1485710 AAAC 1485713 | || Sbjct 298123 AGAC 298126 >seq73 Length=2013901 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 1828757 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCCAGCTCCCCGGGCA 1828698 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| |||||||||||||| || | ||| ||| ||||||||| | Sbjct 1828697 GCAGGAGGCGCACAGCGGTCTGGATCTCACGAGAAGTGATGGTGGAGCGCTTGTTGTAGT 1828638 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| ||||||| |||| ||||| || ||||| ||||||| Sbjct 1828637 GAGCCAGGCGGGAGGCCTCGCCAGCGATGCGCTCGAAGATGTCATTCACAAAGGAGTTCA 1828578 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 1828577 TGATGCTCATGGCCTTGGAGGAGATGCCTGTGTCGGGGTGTACCTGCTTCAGCACCTTGT 1828518 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 1828517 ACACATAGATAGAGTA 1828502 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||| |||||| ||||||| || || ||| Sbjct 1811561 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCCAGCTCCCCCGGCA 1811620 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||| || ||||| |||||||| | | ||| || ||||||||| | Sbjct 1811621 GCAGGAGGCGCACCGCAGTCTGAATCTCGCGAGAGGTGATGGTAGAGCGCTTGTTGTAGT 1811680 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| ||||||| ||||||| |||| ||||| || || || ||||||| Sbjct 1811681 GGGCCAAGCGGGAGGCCTCGCCAGCGATGCGCTCGAAGATGTCATTCACGAAGGAGTTCA 1811740 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1811741 TGATGCTCATGGCCTTGGAGGAGATGCCTGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1811800 Query 1485710 AAAC 1485713 | || Sbjct 1811801 ACAC 1811804 >seq5 Length=150641573 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||||| ||||| ||| Sbjct 27645674 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCCGGCA 27645733 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| ||||||||||||||||| | | ||| ||| ||||||||| | Sbjct 27645734 GCAAGAGCCGCACCGCGGTCTGGATCTCGCGAGAGGTGATGGTGGAGCGCTTGTTGTAGT 27645793 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| | ||||||||| || ||||||| Sbjct 27645794 GCGCCAGGCGCGTGGCCTCCCCGGCGATGCGCTCGAAGACGTCGTTGACGAAAGAGTTCA 27645853 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 27645854 TGATACTCATGGCCTTGGAGGAGATGCCCGTGTCCGGGTGGACCTGCTTCAGCACTTTGT 27645913 Query 1485710 AAAC 1485713 |||| Sbjct 27645914 AAAC 27645917 >seq514 Length=269024 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | |||||| || ||||||| ||||||||||||||| || | || || || |||| Sbjct 173223 CGGCGAGGCCGATCCCTCCGGCCGACTTGGAGATGAGCGCACAGTGCTTGAGTGTGTCGT 173164 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||||| |||| |||||||| || ||| || || Sbjct 173163 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAACA 173121 >seq1 Length=263920458 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||| ||||| ||||||| || ||| | | Sbjct 144584271 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGTCGTGCTTGGCCAGCTCCCCGGGAA 144584212 Query 1485530 TGATCAGGCGCACGGCGGTC 1485549 | ||||| ||||||||| Sbjct 144584211 GCAGGAGGCGGACGGCGGTC 144584192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915559539459623