Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3801 134 9e-27 seq8 114 8e-21 seq6 84.2 1e-11 >seq3801 Length=8881 Score = 134 bits (148), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||| ||||| | ||| |||||||| |||||||| || || Sbjct 4131 CCTCCCCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGAC 4190 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| |||||||| |||| | |||||| ||| | || Sbjct 4191 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGG 4250 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| ||||| | ||||| || || || || || | ||| | | || | Sbjct 4251 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAAC--ATTCTCAATGGTGTCACTTGGTTCCA 4308 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || |||||||| || ||||||||||| ||||||||||||||| Sbjct 4309 CTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 4358 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 3689 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 3748 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || | ||||||||| | || | || |||||||| Sbjct 3749 TTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 3808 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || ||| | || | || ||| |||||| || | || ||||| Sbjct 3809 TTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGT 3868 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||||||||| ||||| |||||||| Sbjct 3869 CTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||| || ||||| | ||| ||| ||||| |||||||| || || Sbjct 5043 CCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGAC 5102 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || |||||||| |||||||| |||| | ||||||||| | || Sbjct 5103 AGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGG 5162 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || |||||| | | || | ||| ||| || || Sbjct 5163 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACC 5222 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || ||||| || || || |||||||| ||||||||||||||| Sbjct 5223 TCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 5270 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||| || ||||||| ||| ||| ||||| ||||| ||||| || Sbjct 5499 CCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 5558 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || || || ||||||||||||| | ||||||||| | || Sbjct 5559 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5618 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| ||||| | || || ||||| || || || | ||| | | ||| | Sbjct 5619 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTTGGCTCCA 5676 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || || | |||||| |||||||||||||| Sbjct 5677 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5725 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| || || ||||| || || |||| |||| || || ||||| |||||||| Sbjct 3939 TCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAA 3998 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||||||| | || | || || ||||| | ||||| |||||| Sbjct 3999 ATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTC 4058 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | | |||||| || | || ||||| ||||| || | ||| || ||| Sbjct 4059 TCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACA 4118 Query 34967 AAGATCTGCATG 34978 |||||||||||| Sbjct 4119 AAGATCTGCATG 4130 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | || ||| || || || | ||| ||| ||||| ||||| || || || Sbjct 5271 CCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAG 5330 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || || || ||||||||||||| | ||||||||| | || Sbjct 5331 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5390 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || |||||| | | || | || | | || || Sbjct 5391 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACC 5450 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || | ||| || || || |||||||| Sbjct 5451 TCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 >seq8 Length=3271537 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || |||||||| | |||| ||||||||| || || ||||| || Sbjct 1336507 CCACCCCTCAGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAA 1336448 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||| ||||| || | |||||||| |||| Sbjct 1336447 AGAGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 1336388 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | || ||| ||| | Sbjct 1336387 ATGCCTTCTTTCTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCA 1336330 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| || |||||||| ||||| | |||||| Sbjct 1336329 CCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCAT 1336281 >seq6 Length=80741955 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||| | ||||| || || ||||| || || || || | || ||| Sbjct 46145037 ACCAAGTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCCTCC 46145096 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || |||| || || |||||||| | | ||||| | || | ||| || ||||| | Sbjct 46145097 AGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTGTCCTGG 46145156 Query 34889 ATTTTTTGTTTGACGGATGCT-ATCGAT-TCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||||| |||| | | || | || | ||| ||| ||| || || | || | || | Sbjct 46145157 ATTTTGGTCTTGATG--TTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTTGTTT 46145214 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| |||||||| ||||||||||||||||| Sbjct 46145215 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGAT 46145248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325667169706883