Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 7e-15 seq78 96.9 3e-14 seq1 89.7 4e-12 seq11 87.8 1e-11 >seq7 Length=7025928 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | ||||| |||| |||||||||||||||||| ||||| || | | ||| Sbjct 3023558 TTTTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCGTTAATGATCCGGAGCACA 3023617 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 3023618 TTGAGACCAGCAATGGTTCCCGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAGTAG 3023677 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 3023678 GCTGGGACTGTGACCACAGCAT 3023699 >seq78 Length=2017131 Score = 96.9 bits (106), Expect = 3e-14 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 ||||| || |||| ||||| ||||| || |||||| | ||| || || ||||||||| Sbjct 487725 GTAGCTACTGTAGCCTTTGGAATGGGCATCAATAAAGCAGATATTCGAACAGTTATTCAT 487784 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 || |||||||| ||| | || ||| || ||||| |||||||| || || || |||||| Sbjct 487785 TATGGAGCTCCAAAGGAAATGGAATCATACTATCAGGAAATTGGAAGGGCTGGCCGTGAT 487844 Query 131300 GGA 131302 ||| Sbjct 487845 GGA 487847 >seq1 Length=263920458 Score = 89.7 bits (98), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 1079025 ACAAGAATCATTGAATTAGAAACGTATCCAAAATTTTCGTATTGTTTCATTGCACACGAC 1079084 ||||| ||||| |||||||| || | |||| | ||| | ||||| |||| | || Sbjct 56050210 ACAAGTATCATAGAATTAGATACTTGTCCATATAGTTCCTGCTGTTTTGCTGCATAGGAG 56050151 Query 1079085 AAATTAATCAAATTCCAAGCAATAATTCCGGGTCTACCATTAAAAAACAGTTTCAAATCA 1079144 | ||||| | | |||| || | ||| || || | |||||| ||||||||||| |||||| Sbjct 56050150 AGGTTAATAAGAGTCCATGCTACAATGCCTGGGCGACCATTGAAAAACAGTTTGAAATCA 56050091 Query 1079145 GTTC---CAAATATTTCAGGATTAAATTCAATACCCATAACAATATCATAAAATAATTTT 1079201 | | ||| ||||||||||||||| ||||| | | || || || || || Sbjct 56050090 AACCACTCTCCTATACGAGGATTAAATTCAATTCCCATCATGAAGTCGTAGAAGAAGTTA 56050031 Query 1079202 CCTGTAAATTTATTA 1079216 || || |||||| || Sbjct 56050030 CCAGTGAATTTACTA 56050016 Score = 87.8 bits (96), Expect = 1e-11 Identities = 194/290 (67%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || || || || || |||||||| | || | || | ||| | | || | || Sbjct 1382138 CGGTTGTCGAAGTCCTCGCCTCCCAAGTGGGTGTCACCAGCCGTGGACTTCACCTCAAAG 1382197 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||| | | ||| | | ||||| ||| ||||| |||| || || || Sbjct 1382198 ATGCCATCTTCGATGGTCAAGATGGAGACATCGAAGGTGCCACCGCCCAGGTCGAAGATG 1382257 Query 282308 AGTACATTCATTTCTTTGTCT----TGGTTTT--TATCAAGACCATACGCAAAAGCAGCA 282361 || |||||| | || | | || ||| | || || ||||| || | |||||| Sbjct 1382258 AGGACATTCTTCTCGCCGGCCCCACTGCCTTTCTTGTCCAGGCCATAGGCGATGGCAGCA 1382317 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || |||||||| || | | |||||| || |||| || | || ||||| ||| Sbjct 1382318 GCTGTGGGCTCATTAATGATGCGAAGAACATTGAGGCCAGTGATGGTGCCGGCATCCTTA 1382377 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| | || || || || ||||| || || ||||| || ||||| Sbjct 1382378 GTGGCTTGGCGCTGGGAGTCATTGAAATACGCCGGCACAGTGATGACGGC 1382427 >seq11 Length=4257874 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| ||||| |||||| || || ||||||||||| | ||||| |||||||| || Sbjct 922450 TTGTCAATGGCAGACACATTGAGGATGCCATTGGCATCAATGTCAAAGGTGACTTCGATC 922391 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || ||||| || | ||||||| ||||||||| ||| | ||| | ||||| ||| Sbjct 922390 TGTGGGACACCCCGAGGAGCAGGGGGGATCCCTGTCAACTCAAACTTGCCCAGCAAGTTA 922331 Query 281537 TTATCTTTAGT 281547 || ||||| || Sbjct 922330 TTGTCTTTGGT 922320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740313388587282