Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3801 170 4e-37 seq1 140 6e-28 seq14 89.7 1e-12 >seq3801 Length=8881 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||||||||| || | ||| ||||| ||||| ||||| || |||||||| || Sbjct 4131 CCTCCCCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGAC 4190 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || || || || | ||||| ||||||||||| Sbjct 4191 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGG 4250 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| || || || || ||||| ||||| || ||| | ||||| ||| Sbjct 4251 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACT 4310 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| ||||| |||||||| Sbjct 4311 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| ||||||||||| || | ||| ||||| || |||||||| || || || || | Sbjct 5497 TACCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 5556 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || ||||| || || ||||| | || || || ||||| | Sbjct 5557 AAAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 5616 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||| ||||| || || ||||| ||||| || ||| | || || | Sbjct 5617 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCA 5676 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || |||||||| ||||| ||||| ||||| ||||||||| Sbjct 5677 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 5726 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||||| |||||||| || || ||||||||||| ||||| || || || Sbjct 4815 CCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAG 4874 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || || || || | ||||| |||||||| || Sbjct 4875 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGG 4934 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| || || || |||||||| || ||| | ||||| || Sbjct 4935 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACC 4994 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| || || ||||| |||||||| Sbjct 4995 TCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || |||||||| ||||| ||||||||||| || || || || || Sbjct 4359 CCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 4418 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || ||||| || ||||| || | ||| ||||| ||||| || Sbjct 4419 AGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGG 4478 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| || |||||||| ||||| ||||| || || | ||||| ||| Sbjct 4479 ATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACT 4538 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || |||| ||||| ||||| || ||||| Sbjct 4539 TCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||||||||| || | ||| || || || |||||||| || |||||||| || Sbjct 5043 CCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGAC 5102 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| ||||| || || || || || | || || || ||||| || Sbjct 5103 AGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGG 5162 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| ||||| || || || |||||||| || ||| | ||||| || Sbjct 5163 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACC 5222 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || ||||| |||| ||||| ||||| |||||||| Sbjct 5223 TCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || ||||| ||||||||||| ||||| || || || Sbjct 3903 CCTCCCCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAG 3962 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || || || || | ||| || || |||||||| Sbjct 3963 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGA 4022 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| || || || || || || ||||| || ||| | || || ||| Sbjct 4023 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACT 4082 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || ||||| || || ||||| |||||||| Sbjct 4083 TCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | | ||| || | ||| || || || |||||||| ||||| || || || Sbjct 4587 CCTCCCCTGAGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAA 4646 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || || || || ||||| ||||||||||| Sbjct 4647 AGGGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGG 4706 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| || || || || || || ||||| || ||| | || || ||| Sbjct 4707 ATGCCTTCTTTGTCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 4766 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || ||||| ||||| || || |||||||| Sbjct 4767 TCGAGAGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 >seq1 Length=263920458 Score = 140 bits (154), Expect = 6e-28 Identities = 137/174 (79%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| | || ||||||||||| | | |||| ||||| || || ||| | ||||| || Sbjct 199395186 GATAGCTGGGGCTTTATGGTGGTATTTTGTATCAAAAGGAATTGAGTACCTGGATACAGT 199395245 Query 60199 GTTTTTCATACTTAGGAAA-AAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATT 60257 ||||||||| |||| |||| || ||||| || | |||||| |||| || || ||||||| Sbjct 199395246 GTTTTTCAT-CTTAAGAAAGAAATTTAACCAAATCAGTTTTCTACATGTCTACCATCATT 199395304 Query 60258 TTACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || |||||||||||| | ||| | ||||| |||||| |||| ||||| |||| Sbjct 199395305 ACACCATGTTTACTTTATGGTGGATCGGCATAAAATGGGTTGCAGGAGGACAAG 199395358 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 |||||||| ||| | | || || || || ||||| ||||| || |||||||| || || Sbjct 199401832 CAATTCCACATAACGCTTGGTCACACGGCCATGTCTATTTATATTGATTGTCCCTTCCCT 199401891 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| |||| ||||| || | |||||||||||| Sbjct 199401892 AAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACTTTCATTGTTCTGTTTGGTAAC 199401951 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||||| | | |||||||||| Sbjct 199401952 TTCTATTATCGGACATACAAGA 199401973 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 59870 GATAAACGTGTAGACAATTGGCTGTTAATGAATTCACCTATTCCTACAATATGTATAAGT 59929 ||||||||||| || || |||| |||||| | || || |||| ||||| ||| || Sbjct 199373101 GATAAACGTGTCGAGAACTGGCCCTTAATGGAATCTCCGTTTCCCACAATCGCTATCAGC 199373160 Query 59930 ACTTTGTATCTAATTATTGTCTGGTTAGGACCTAAATGGATGAAAACTAGA 59980 ||| |||| || ||||||| ||| | ||||| ||||||||||| | |||| Sbjct 199373161 ACTGTGTACCTTCTTATTGTTTGGCTGGGACCCAAATGGATGAAGAATAGA 199373211 >seq14 Length=14352415 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 |||| || ||||| || || || ||||||| || || || || || ||| | || | Sbjct 9651890 GCAGCACCAAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCAT 9651949 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 | || || || || || ||||||||||| || || || ||||| || ||||| || | Sbjct 9651950 CCTCCAGCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGT 9652009 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 | || || || || || ||||| ||| | || || || || || || ||||| || || | Sbjct 9652010 CCTGGATTTTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGG 9652069 Query 82777 TCTTGCC 82783 | ||||| Sbjct 9652070 TTTTGCC 9652076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981745973128923