Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3801 140 3e-28 seq8 127 2e-24 seq6 116 4e-21 seq14 111 2e-19 seq514 100 3e-16 >seq3801 Length=8881 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || ||||||||||| | Sbjct 3704 GGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA-TCTTCGAGCTGCTTCC 3762 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || ||||||||||||||||| ||| || || Sbjct 3763 CGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTCGCCT 3822 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| ||||||| || |||| |||| ||| |||||||| || | Sbjct 3823 TCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTCTTGCCGGTGAGGG 3882 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 3883 TCTTCACAAAAATCTGCAT 3901 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| |||||||| || | || | | | || || |||||||| | Sbjct 4616 GGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCA-TCTTCAAGCTGCTTCC 4674 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||||| ||||| || |||||||||||||| ||||| ||| || || Sbjct 4675 CGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCT 4734 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || |||| |||| |||||| || |||| | Sbjct 4735 TGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTCAAGG 4794 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||||||||||||| || Sbjct 4795 TCTTCACGAAAATCTGCATGCCT 4817 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| | ||| | | | || || ||||| ||||| Sbjct 5301 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCA-TCTTCAAGCTGTTTGCC 5359 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || ||||||||||| ||||| |||||| ||| Sbjct 5360 GGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTT 5419 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| | || || || || | ||||| ||| ||||| |||| || Sbjct 5420 GACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGT 5479 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 5480 TTTCACGAAAATCTGCAT 5497 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| |||||||| |||||||| ||| | || | | | || || || Sbjct 4836 AAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCA-TCTTCAAG 4894 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | || ||||| || || ||||||||||| ||||| ||| Sbjct 4895 CTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGAT 4954 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | || ||||| || | |||| ||| ||||| Sbjct 4955 CTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGTCTTGCC 5014 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||| ||||| || |||||||||||| || Sbjct 5015 CGTCAAGGTTTTGACAAAAATCTGCATGCCT 5045 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| | ||| | | | || || ||||| ||||| Sbjct 5529 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA-TCTTCAAGCTGTTTGCC 5587 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || |||||||| || ||||| |||||| ||| Sbjct 5588 GGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTT 5647 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | |||||||| || | |||| ||| ||||| |||| || Sbjct 5648 GACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGATGGTCTTGCCAGTCAAGGT 5707 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 5708 CTTCACAAAGATCTGCAT 5725 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || || ||||| || || | | | || || || ||||| | Sbjct 5072 GGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCA-TCTTCAAGTTGCTTCC 5130 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | || ||||||||| || |||||||| || ||||| |||||| || Sbjct 5131 CGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCT 5190 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| |||| ||||| || | || | ||||||||| ||||| | Sbjct 5191 TGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGTTTTGCCAGTCAGGG 5250 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||||||| || Sbjct 5251 TCTTCACAAAGATCTGCATGCCT 5273 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || || ||||| || ||| | | | || || |||||||| || Sbjct 4161 GTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCA-TCTTCAAGCTGCTTCCC 4219 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | || ||||| || ||||||||||| || ||||| ||| || ||| Sbjct 4220 GGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTCTTGGATTTTCGCCTT 4279 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || ||||| |||| |||| ||| ||||| || || || Sbjct 4280 AACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGTCTTGCCAGTGAGGGT 4339 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 4340 CTTCACAAAGATCTGCATGCCT 4361 >seq8 Length=3271537 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| || | ||| | | | || || |||||||| | Sbjct 1336478 GGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTCC 1336420 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || ||||||||||| || || |||||| || Sbjct 1336419 CGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCTTTCTCCTGGATCTTGGCCT 1336360 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | ||||| ||| || || ||||| | Sbjct 1336359 TCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCTGTCAGGG 1336300 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || |||| |||||| Sbjct 1336299 TCTTCACAAAAACCTGCAT 1336281 >seq6 Length=80741955 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||| |||||| |||||||| || | ||| | |||||| ||| Sbjct 46145040 AAGTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCCTCCAGC 46145099 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||| || || | || || | || ||||| ||||||||| ||||| ||||| ||| Sbjct 46145100 TGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTGTCCTGGATT 46145159 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||||| ||||| ||||||||||||| | || |||||||| Sbjct 46145160 TTGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTTGTTTTGCCC 46145219 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || || || ||||||||| Sbjct 46145220 GTCAGGGTCTTCACAAAGATCTGCATG 46145246 >seq14 Length=14352415 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||||||||||| || ||||| || | ||| | ||||| ||| Sbjct 9651898 AAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATCCTCCAGC 9651957 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||||||||||| ||||| ||||| ||| Sbjct 9651958 TGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTCCTGGATT 9652017 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | |||| |||||| |||||||||| || | ||||| ||||||||| Sbjct 9652018 TTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGTTTTGCC 9652076 >seq514 Length=269024 Score = 100 bits (110), Expect = 3e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||||||||| ||| || |||||||| ||||| |||| ||||| || | Sbjct 181440 TGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGT 181381 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| |||||||| | ||| ||||| ||||||||||| Sbjct 181380 TGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGG 181341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483381781898680