Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq249 114 1e-20 seq115 105 8e-18 >seq2 Length=199619895 Score = 176 bits (194), Expect = 5e-39 Identities = 570/872 (65%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || |||||||| || || | ||| ||| ||| ||| ||||| || | || ||| | Sbjct 46165325 TCAAACTTGTTGGCAAAGAAGTGGTGCT--TTCG-CAACATCCAGTTCAAGTCTCCCACT 46165381 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || ||||| || || | ||| | || ||||| || |||||| |||| || | Sbjct 46165382 CCAAAGACACACACTGAGCGGATGTGTATCCCACTGCAAGGTGGATACGGGGCACCCTTT 46165441 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||||||||| |||| ||||||||||| ||||| | | ||| | |||||| ||| Sbjct 46165442 GACACATCCCCCTCAAAGTAATGCCACTTAACAAACCTGGCCAGAGCGTTCATGTCTGAG 46165501 Query 162301 GTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 || || || | |||| ||| || ||||||||||| | || | || ||| ||||| Sbjct 46165502 ACATCATATTTAT-TACTGGCGGAGACAGCTCCAGGAACTTCAGGAATTCGCTGAAGAGT 46165560 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTC---CCT 162416 |||||||| || ||| || ||||| ||||| || || | ||| || || || | | Sbjct 46165561 AGCCCACAAGTATTCATCAGGACTGTACGTGTCTTTAGCCCATTCTATAAAAGCAAGGAT 46165620 Query 162417 GACCGTTTTATCGTATAGA-ATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 | || || || ||| | || || | || | |||| | |||| |||||| || | Sbjct 46165621 GTTGGTGTTCTCCAATACATATTCAACAAACCT----CCTGCTAACAACAAAGTAGGCAC 46165676 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | ||||| || | |||| | | ||| || ||| |||||| ||| | || || Sbjct 46165677 TGCCAGAGAAAATGGGTGTATTGAGAGGTGGATGCTGCTTGTCTATTCCCATATTCTTTA 46165736 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 || | || || | || | || ||| |||||| || ||| | | || | | Sbjct 46165737 CCTTACCATCAATAACTTCATGATGCTTTTTCCACCGTACCTCCTTGTTTGAAGGCATTT 46165796 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || || | ||| || ||| | ||||||||||| | || || | | Sbjct 46165797 TCTCAGTTTCCAAACTATTTTCACCTTTGAGGGCCTTCAGCTTCTCTATTATTTCCTGGT 46165856 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 | ||||| | || || || | || || || || || | || ||||| || | | Sbjct 46165857 TAGTCTTGATAGGGAAATCCATACCACAAAGGTTGATCAGGTACTTCCAGTTCGCACCCC 46165916 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | ||| || || | | ||||| || || || || || | |||||||| || |||| Sbjct 46165917 TCCTGTAGAGGTCTTTCATGCAGTTGAGGTCAGCTTGCACTCTGCTCCACGAGGCATACA 46165976 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || || |||| |||| | ||| | ||| | || || ||| | ||||| | | Sbjct 46165977 CAACACTTTCCAGTTGGCTGGCAATAAAAATGTTGCCAAAGCATGAAGCAATCCCTTTAA 46166036 Query 162836 ---CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT-ATAGATTC 162891 | ||||| || | || || | ||| |||| || || | ||||| |||| ||| Sbjct 46166037 CTGCAGCCAG-GAAAGATTCAGG--AGACTTCTTATCAACATGAATGCAGTAATAG-TTC 46166092 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || |||||||| | || | || || | ||| || || || || || || || Sbjct 46166093 TGAGGTGCATAGATGGCTCGCAAAAGCCTTTCAAGCATGTCAATTTTGTGATGAACTACT 46166152 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| || ||||| || || || ||||| Sbjct 46166153 ATTGAATAAGCAATGGGAAATTCTGCTTCCTC 46166184 >seq249 Length=841488 Score = 114 bits (126), Expect = 1e-20 Identities = 225/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| | |||||| |||||| || | | || |||||| || | Sbjct 269736 TTGGTCTTGATGGGCAGGTCGGTCCCGCAGGTGTTGAGGAGGTAGCGCCACTTGACCGGG 269677 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 || | || |||| | |||||||| ||||| ||||| | |||| || || ||| Sbjct 269676 CTTCGGAGAAGGTCCTCCATGCAGTTCAGGTCGGCTTGGACCCTGTTCCAGGAGGCATAC 269617 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || | |||| | | | ||| | ||||| || | || || || || |||| | Sbjct 269616 ACCACCCGCTCCTGCTTGGAGGCCAGGAAGACGTTCCCAAAGCAGGACACGATCCTCCGA 269557 Query 162835 ACGGCCAGT-GAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 || || | | || | | | ||| | ||||| || |||||||| | ||||| Sbjct 269556 ACCGCTTCTTGCAAAGGTTGCGGAGACTTGGCG-TCTACATGGACGCAGTAGACGTTCTG 269498 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||||||||||||||||||| | | ||| |||||||| | ||| | ||| | |||||| Sbjct 269497 CGGGGCGTAGATGGCCCTCAACAGCCGCTCAAACATCTCCACCTTGTCGTGGAGCACGAT 269438 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| ||||||||||| ||||||| Sbjct 269437 GGAGTACGCGATGGGGAACTCTTCCTCCTC 269408 >seq115 Length=1657128 Score = 105 bits (116), Expect = 8e-18 Identities = 433/674 (64%), Gaps = 24/674 (4%) Strand=Plus/Plus Query 176997 GGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCC 177056 |||| || || || || || ||||| | | || || || || || || | || ||| Sbjct 169321 GGGATATAGTTCTCATAGTTTTCTCTAGGAGGGCCAAGAACAATTGGCACTGATCCAGCC 169380 Query 177057 ATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCG 177116 | || | ||| ||||| || || |||||||| |||| | || |||||||| | Sbjct 169381 AGAAAGGCATTGTAAAGTTTCTCAGTGATATAGTCTTTGTGGATAGAATTCTCAAAAGAA 169440 Query 177117 AGATAGAATTTACA---GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCT 177173 || || || || || |||| ||||| | |||| || | | ||| | ||| || Sbjct 169441 AGGTAAAACTTGCAAGTGGAA-ATAGTTG--GGATCAAATTTTTGTCGCTCACATAGTCA 169497 Query 177174 CCTACTACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTC 177233 || | | | | ||| || |||||| || | || |||||| || || ||| ||| | Sbjct 169498 CCAAATGCTTGCCCATAGGTATGTATTTCAAGGTATTTACTTAGTTCATTGTAATATTTG 169557 Query 177234 GATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG 177293 || | || || |||||| || || || ||||| ||||| | | | ||||| Sbjct 169558 ACCCTTGCATGTTCAGGGTTCCAGTTACTCACCACCCAACAAACCAGCCTT-TCTTTATT 169616 Query 177294 GGAACGGGATTCGATACTAAT-GCAGTGTCTCT-GAGCGTTAGTGATCCATAGGGCACGT 177351 | | ||| | || || | ||| | | | || | | | | ||||| ||||| | Sbjct 169617 TG----GCATTTCAAACAAAAAGGAGTTTGTGTTGACCATCATGAAGCCATAAGGCACTT 169672 Query 177352 GAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC----T 177407 ||||||| || || || | || || | || ||||||||||| | ||| || || | Sbjct 169673 GAATATCTGAATCACGGCGATAAGTGAGTGTCAGATTGAAAAGATGTTCAATCCCAGCCT 169732 Query 177408 TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTT 177467 | | | || | |||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 169733 TCTGCGGAGTGTGTGTT----GGCGATTCCAAGTTCATCCAGATCCATTTCTGAAACGAC 169788 Query 177468 GGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACT 177527 || || |||| | ||||| || |||| ||| || ||||||||||||| || Sbjct 169789 GGCCTTGGTTGCTGAGGTAAGTTAGTCAGATCCCAACTGATGTCTCTGTGGTGAATGAGC 169848 Query 177528 ACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTA 177587 ||||||| || || ||| | | | ||| || | || ||| || ||||||| Sbjct 169849 ACGGCATGGGAGCGGTTATACAGTGTGCGGTCAGTAGTGAGATGGCACCCATGTATGTTG 169908 Query 177588 AATCTGGAGCTACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGAGGAGT 177647 ||| | | || | | || || ||||| | ||||| | |||||| ||| | || Sbjct 169909 AATGTTGGGCAAAA---TTTCAGGTCAAACGTCTGGCCAAATGGCCACACCCATATCAGA 169965 Query 177648 ATTAACGTCTCCTT 177661 || |||||| || Sbjct 169966 ATAGTCGTCTCATT 169979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578385313307200