Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 1e-11 seq4 84.2 5e-11 >seq1 Length=263920458 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||| |||||| || ||||| || |||||||| ||| |||| |||| |||||| Sbjct 148006134 GTAGCCTTTGCTGCAGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCTATATTTTGG 148006075 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 | || ||||| || |||||||||||||| | || |||||| || | ||| |||||| Sbjct 148006074 TTGAAAAAGCGAGGTCTGATGCCTGGACTCACTTTCTCCAATGAACTGATCAGTAGAGAT 148006015 Query 131984 GA 131985 || Sbjct 148006014 GA 148006013 >seq4 Length=156502444 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || |||||||| | |||||||| || ||||| || ||||| || |||||| Sbjct 14021110 AGAGTGGTTGCTTTTGCCTCGGTTGAAGGAATCTTCTTCTCTGGTGCCTTTGCAGCTATC 14021169 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAA 131968 |||||||| ||||| | ||| ||||||| || ||| | || |||||| || Sbjct 14021170 TTTTGGCTCAAGAAAAGAGGACTGATGCCGGGTCTCACTTTCTCCAATGAA 14021220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186714614606177