Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3801 132 3e-26 seq6 84.2 1e-11 >seq3801 Length=8881 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| ||| || || |||||| ||||| || |||||||| ||||| || || || | Sbjct 4370 ACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCC 4429 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | ||||| |||||||||||||| | ||| || ||| |||| | || ||||| Sbjct 4430 ATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTT 4489 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| || || |||| || | ||||||||||| |||||| || | |||| Sbjct 4490 GTCTTGGATTTT-TGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGA 4548 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || | || || |||||||| ||||| Sbjct 4549 TGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||||||| | ||| | || |||||| |||||| || |||||||| ||||| Sbjct 5498 ACCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 5557 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||||| ||||| || ||||| | |||||| ||| | || Sbjct 5558 AAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 5617 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| || || || | ||| ||| |||||| |||| |||| Sbjct 5618 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTTGGCTCCA 5676 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || |||||||||||||| Sbjct 5677 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5725 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||||||| | || | || |||||| || || || ||||| ||||| || Sbjct 4131 CCTCCCCTCAAACGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGAC 4190 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || ||||| |||||||| | ||||||||| | || Sbjct 4191 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGG 4250 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || |||||||| |||||| || ||||| ||| |||||| |||| |||||| Sbjct 4251 ATGCCCTCTTTGTCTTGGATTTTCGCCTT-AACATTCTCAATGGTGTCACTTGGTTCCAC 4309 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 4310 TTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| |||||| |||||| || ||||||||||| ||||| ||||| | || || Sbjct 5288 CACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTC 5347 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| ||||| || ||||| | |||||| ||| | || | ||||||||||| Sbjct 5348 AAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTG 5407 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | || | || | |||||||||| ||| || || | ||||| || | Sbjct 5408 GATCTT-GGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTCT 5466 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || ||||| || || ||||||||| Sbjct 5467 TGCCAGTCAAGGTTTTCACGAAAATCTGCATA 5498 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| |||||| ||||| || || ||||| |||||||| ||||| | || || | || Sbjct 3926 ATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTG 3985 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || ||||| |||||||| | |||||| ||| | || | ||||||||||| ||||| Sbjct 3986 CTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 4045 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || | || | |||||| || | || || || | ||||| ||||| || | Sbjct 4046 -GGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAG 4104 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| |||||||||||||| Sbjct 4105 TCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| || || || ||| ||||| || || ||||| |||||||| || || | || || Sbjct 4832 CACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATCTTC 4891 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| |||||||| | ||||||||| | || | ||||||||||| Sbjct 4892 AAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTG 4951 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | || | || | |||||| |||| |||||| || | ||||| || | Sbjct 4952 GATCTT-GGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGTCT 5010 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||| ||||| |||||||| Sbjct 5011 TGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 >seq6 Length=80741955 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 |||||||| || || ||| | ||| || || ||||| || ||||| ||| | |||| Sbjct 46145034 AACACCAAGTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTCC 46145093 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| || | || ||||| |||| || || ||| | | || | ||||||||||| Sbjct 46145094 TCCAGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTGTCC 46145153 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| || | | | || |||||||| || | |||||||| | ||| | || Sbjct 46145154 TGGATTTT-GGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTTGT 46145212 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | || || |||||||||||||| Sbjct 46145213 TTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 46145245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328678132741440