Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3801 102 2e-16 seq8 89.7 1e-12 >seq3801 Length=8881 Score = 102 bits (112), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 206163 TAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA 206222 ||||||| ||||| ||| || || | || || || || |||||| | || ||||| Sbjct 5729 TAAAATG---CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTGGA 5673 Query 206223 ---AAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTT 206279 |||| ||||| | || || ||| ||||| ||||| ||||| || || Sbjct 5672 GCCAAGT---GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCC 5616 Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 || ||| || || | ||||||||||| || ||| | |||||||| | ||| | | Sbjct 5615 CCCAGACCAGCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTC 5556 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| |||||| ||||||||||||| |||||||||||||| Sbjct 5555 CGACTACAACATCCAGAAAGAGTCCACTCTTCACCTTGT 5517 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| || ||| | || |||||| |||| Sbjct 5266 CAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGTGAC 5207 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| ||||| || || || ||| || Sbjct 5206 ACTATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAG 5147 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || |||||||| ||||| | |||||||| | ||| || | ||||| ||| || Sbjct 5146 AGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAGATTATAACATC 5087 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || |||||||| Sbjct 5086 CAGAAAGAGTCAACCCTCCACCTTGT 5061 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || ||||| |||| || ||| ||||| | ||| Sbjct 5482 AAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGCGACACTATTGAAAAC 5423 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| || || | |||||| Sbjct 5422 GTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAGCAGAGGTTGATCTTC 5363 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | |||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 5362 GCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAACATCCAGAAAGAGTCC 5303 Query 206365 ACTCTTCACCTTGT 206378 ||||| || ||||| Sbjct 5302 ACTCTCCATCTTGT 5289 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| |||||| | ||||| || |||||| | || || ||| Sbjct 4789 ACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGTGACACCATTGAGAACGTCAAGGCG 4730 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||| || || || ||||| || || |||||||| ||| Sbjct 4729 AAAATCCAAGACAAAGAAGGCATCCCTCCAGATCAGCAAAGGCTCATTTTCGCCGGGAAG 4670 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | || | | || ||||| ||||||||||||| || || ||| Sbjct 4669 CAGCTTGAAGATGGCCGTACCCTTTCAGACTACAATATCCAGAAAGAGTCAACCCTCCAC 4610 Query 206374 CTTGTTTTGAGACT 206387 ||||| |||| || Sbjct 4609 CTTGTCCTGAGGCT 4596 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 || |||| |||||||| || || ||||||||||||| ||| ||||| | | || | Sbjct 4596 AGCCTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGG 4655 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| |||||||| |||||||| || |||| ||| ||| Sbjct 4656 CCATCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGA 4697 >seq8 Length=3271537 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||| |||||| ||||| | || ||||| ||||||| ||| ||||||| | ||| | Sbjct 1336498 AGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1336439 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||||||||| ||||| ||||| |||| Sbjct 1336438 CCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCC 1336405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181723027595897