Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3801 116 3e-21 >seq3801 Length=8881 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || | || |||||| | ||||| ||||||| ||| | | Sbjct 4586 CATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAG 4527 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || ||| | || ||| |||||| || |||||||| || ||||| || || Sbjct 4526 CGACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCATCCCGCCAGACCA 4467 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | |||| | ||||||||| || ||||||| | | | | ||| ||||| Sbjct 4466 ACAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAA 4407 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || || ||||||||||| | || |||||| || Sbjct 4406 CATCCAGAAAGAATCCACTCTCCACTTAGTGCTA 4373 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| || || |||||| | ||||| |||||||||| | | Sbjct 4130 CATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAG 4071 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || || ||||| || ||||| || || || || || || Sbjct 4070 TGACACCATTGAGAACGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCA 4011 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | |||| || ||| || || || ||||||| | | | || ||| ||||| Sbjct 4010 GCAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 3951 Query 25354 TATTCAAAAAGAATCCAC 25371 ||| || ||||||||||| Sbjct 3950 TATCCAGAAAGAATCCAC 3933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || || || |||||| | ||||| ||||||| || ||| Sbjct 4814 CATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAG 4755 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || || ||||| || ||||| || || || || ||||| Sbjct 4754 TGACACCATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 4695 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 |||||| ||||||| || ||| || || || ||||||| | | | ||| || ||| Sbjct 4694 GCAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCA--GACTAC 4637 Query 25352 AATATTCAAAAAGAATCCACC 25372 ||||| || ||||| || ||| Sbjct 4636 AATATCCAGAAAGAGTCAACC 4616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| || || || || | ||||| | || || ||| | | Sbjct 5042 CATGCAGATTTTTGTCAAAACCTTGACGGGCAAGACCATCACACTAGAGGTGGAACCAAG 4983 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || || || ||||| || || || || ||||| Sbjct 4982 TGACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGATCA 4923 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| || ||| || || || ||||||| | | | || ||| ||||| Sbjct 4922 GCAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACTCTCTCCGACTACAA 4863 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||| || |||||||||||| | || |||||| Sbjct 4862 TATCCAGAAAGAATCCACCCTCCACTTAGTG 4832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445058475318240