Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq221 192 8e-43 seq287 188 1e-41 seq5 170 3e-36 seq73 161 1e-33 seq514 107 3e-17 >seq221 Length=1009300 Score = 192 bits (212), Expect = 8e-43 Identities = 182/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||||||| |||| |||| ||| |||| ||| Sbjct 335313 TCTACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 335366 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || |||||||| |||| ||||||| | |||||| | Sbjct 335367 TGAGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCC 335426 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | | |||||||||||||||||||| | Sbjct 335427 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACCGCCGTCC 335486 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | | ||| || ||||||| ||||||||||||||||||||||| Sbjct 335487 GCCTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 335537 Score = 188 bits (208), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||||||| |||| |||| ||| |||| ||| Sbjct 344968 TCTACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 345021 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || |||||||| |||| ||||||| | |||||| | Sbjct 345022 TGAGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCC 345081 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 345082 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACGGCCGTCC 345141 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | | ||| || ||||||| ||||||||||||||||||||||| Sbjct 345142 GCCTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 345192 >seq287 Length=650225 Score = 188 bits (208), Expect = 1e-41 Identities = 182/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||||||| || ||| |||| ||| |||| ||| Sbjct 243133 TCTACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCCTCCAAGGCCA 243186 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || || ||||| |||| ||||||| | |||||| | Sbjct 243187 TGAGCATCATGAACTCCTTCGTGAATGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCC 243246 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | | |||||||||||||||||||| | Sbjct 243247 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACCGCCGTCC 243306 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | | ||| || ||||||| ||||||||||||||||||||||| Sbjct 243307 GCCTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 243357 Score = 188 bits (208), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||||||||||||| |||| |||| ||| |||| ||| Sbjct 266158 TCTACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 266105 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || || ||||| |||| ||||||| | |||||| | Sbjct 266104 TGAGCATCATGAACTCCTTCGTGAATGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCC 266045 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | | |||||||||||||||||||| | Sbjct 266044 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACCGCCGTCC 265985 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | | ||| || ||||||| ||||||||||||||||||||||| Sbjct 265984 GCCTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 265934 Score = 185 bits (204), Expect = 1e-40 Identities = 188/244 (77%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| || |||||||||||| |||| |||| Sbjct 315201 TACTCCATCTATGTCTACAAGGTGCTGAAACAGGTGCACCCCGACACCGG-----CATC- 315148 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || || || ||||| |||| ||||||| | Sbjct 315147 TCCTCCAAGGCCATGAGCATCATGAACTCCTTCGTGAATGACATCTTCGAGCGCATCGCC 315088 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| |||||||||| || |||||||||| ||| ||| | | ||||||||| Sbjct 315087 GGGGAGGCCTCCCGCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATC 315028 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| ||||| | | | ||| || ||||||| ||||||||||||||||||| Sbjct 315027 CAGACCGCCGTCCGCCTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGC 314968 Query 725139 ACCA 725142 |||| Sbjct 314967 ACCA 314964 Score = 174 bits (192), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| ||||| || | | ||| ||| |||| ||| Sbjct 298125 TCTACAAGGTGCTGAAGCAGGTTCACCCGGACACTGGT-----ATC-TCCTCCAAGGCCA 298072 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || || ||||| |||| ||||||| | |||||| | Sbjct 298071 TGAGCATCATGAACTCCTTCGTGAATGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCC 298012 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | | |||||||||||||||||||| | Sbjct 298011 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACCGCCGTCC 297952 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | | ||| || ||||||| ||||||||||||||||||||||| Sbjct 297951 GCCTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 297901 >seq5 Length=150641573 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| ||||| || || |||| ||| |||| ||||| Sbjct 27645914 TACAAAGTGCTGAAGCAGGTCCACCCGGACAC-----GGGCATC-TCCTCCAAGGCCATG 27645861 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||| | |||| ||||||| | |||||| ||| Sbjct 27645860 AGTATCATGAACTCTTTCGTCAACGACGTCTTCGAGCGCATCGCCGGGGAGGCCACGCGC 27645801 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | ||||||||||||||||| ||||| Sbjct 27645800 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCTCGCGAGATCCAGACCGCGGTGCGG 27645741 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||||| |||||| ||||||||||||||||||||||| Sbjct 27645740 CTCTTGCTGCCGGGCGAGTTGGCCAAGCACGCCGTCTCCGAGGGCACCA 27645692 >seq73 Length=2013901 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || | |||| ||| |||| ||||| Sbjct 1828517 TACAAGGTGCTGAAGCAGGTACACCCCGACACAGG-----CATC-TCCTCCAAGGCCATG 1828570 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| || ||||| |||| ||||||| ||||||| ||| Sbjct 1828571 AGCATCATGAACTCCTTTGTGAATGACATCTTCGAGCGCATCGCTGGCGAGGCCTCCCGC 1828630 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | || |||||||||||||| |||||| Sbjct 1828631 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCTCGTGAGATCCAGACCGCTGTGCGC 1828690 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| |||||| ||||| |||||||||| Sbjct 1828691 CTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCTGTCTCTGAGGGCACCA 1828739 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || | |||| ||| |||| ||||| Sbjct 1811801 TACAAGGTGCTGAAGCAGGTGCACCCCGACACAGG-----CATC-TCCTCCAAGGCCATG 1811748 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || || ||||| |||| ||||||| ||||||| ||| Sbjct 1811747 AGCATCATGAACTCCTTCGTGAATGACATCTTCGAGCGCATCGCTGGCGAGGCCTCCCGC 1811688 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| | || |||||||||| || ||| | | |||||||| ||||| || |||||| Sbjct 1811687 TTGGCCCACTACAACAAGCGCTCTACCATCACCTCTCGCGAGATTCAGACTGCGGTGCGC 1811628 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| |||||| ||||| |||||||||| Sbjct 1811627 CTCCTGCTGCCGGGGGAGCTGGCCAAGCACGCTGTCTCTGAGGGCACCA 1811579 >seq514 Length=269024 Score = 107 bits (118), Expect = 3e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||||||||| || |||||| ||||| Sbjct 181296 CAGCTCTGGTACGCCATCATCGAGTCCCAGACTGAGACCGGCACTCCGTACATGCTCTAC 181355 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || ||| || |||| || |||||||||||||||||||| |||| | || | ||| Sbjct 181356 AAAGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGGACCATCA-AGTGCAGCAA 181414 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| |||||||||||||| Sbjct 181415 CCTCTGCACCGAGATCGT 181432 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 || || ||| || |||||||| ||| ||||| |||||||| ||||| |||||||| Sbjct 173121 TGTTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACACTCAAGCAC 173180 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || ||||||||||||||| ||||||| || ||||| | |||| Sbjct 173181 TGTGCGCTCATCTCCAAGTCGGCCGGAGGGATCGGCCTCGCCG 173223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177188410482034