Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq4 93.3 6e-14 >seq1 Length=263920458 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| || || || |||||||||||||| ||||| ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||||||||| | |||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 39759 CAAC 39762 | || Sbjct 148006131 CTAC 148006134 Score = 104 bits (114), Expect = 3e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 39306 CTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTT 39365 ||| |||||| |||||||| | || ||||| || || || || || || |||||||||| Sbjct 148002237 CTTTTGACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTT 148002296 Query 39366 TGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||||||||| ||| ||||| |||||||| ||||||||||| Sbjct 148002297 TGCCTTCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 >seq4 Length=156502444 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| | ||||| | ||| || || || ||||| || ||||| || || | || ||| Sbjct 14021237 TCATCACGGCTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCTTG 14021178 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||| || || ||||| | ||||| |||||||| ||||| || | ||||| ||| Sbjct 14021177 AGCCAAAAGATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAGCA 14021118 Query 39761 ACAAGTCTCTCTCC 39774 || | |||||| || Sbjct 14021117 ACCACTCTCTCCCC 14021104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| ||||||||||| |||||||| ||||| ||||||||||||| | ||| ||||| Sbjct 14016350 CCAAGTTTTCATTCACAATTCCATCGCTAGCTGCAAAAAATGCCAGGATGTGTGAAATAA 14016291 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 ||||||| || || | | ||| || ||||||| | || || || |||| Sbjct 14016290 AATATTTCTCTTCTGATTTCAGCTTGTTCCAGTGAGGGAAGTCCTTAGATA 14016240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686853357873480