Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq4 95.1 1e-14 >seq1 Length=263920458 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||| | ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 148009454 CAAGAAATCCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 148009395 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || |||||||||||||||||| | || || ||||| ||||||||||| Sbjct 148009394 ATCCATTCGGAAATGTACAGTTTACTTATTGATACTTACATCAAAGA 148009348 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || |||||||| || ||||| ||||| || ||||||||||||| || || |||||||| Sbjct 148002336 AATCCGTTTGACTTCATGGAGAATATCTCACTGGAAGGCAAAACTAATTTCTTTGAAAAG 148002277 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGT---GACAATAAATTTACT 44611 || || |||||||||||| | ||||| || ||| || | | |||||| || || Sbjct 148002276 CGTGTCGGAGAATATCAGAGGATGGGAGTGATGTCAAAAGCTGTAGACAATTCTTTCACC 148002217 Query 44612 ACGGATGAAGATTTCTAA 44629 ||||| |||||||||| Sbjct 148002216 TTGGATGCAGATTTCTAA 148002199 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| ||||| || |||||||| |||||||||||||| |||||| | || Sbjct 148013600 TTTGTGATCTTTCCCATTCAGTACCATGACATTTGGCAAATGTACAAGAAAGCAGAAGCT 148013541 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 |||||||||||||||||||| || Sbjct 148013540 TCATTTTGGACAGCAGAAGAGGT 148013518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || |||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 148006146 GGGGAACGAGTAGTAGCCTTTGCTGCAGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCA 148006087 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||||||||| || || |||||| |||||||||| | || || || ||||| | Sbjct 148006086 TCTATATTTTGGTTGAAAAAGCGAGGTCTGATGCCTGGACTCACTTTCTCCAATGAACTG 148006027 Query 44243 ATAAGTCGTGATGA----AGGCTTA 44263 || ||| | ||||| ||||||| Sbjct 148006026 ATCAGTAGAGATGAGGTGAGGCTTA 148006002 >seq4 Length=156502444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||||| || ||||| ||| | || ||||| || ||| ||||||||||| || Sbjct 39524611 ATGGCATTACCCCCTTGCCATGCTCTCTGCCAGTTCTATGTTGTAAATGGTGAACTCTCT 39524670 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| | || || || |||||| |||| || || || ||||| || || Sbjct 39524671 TGCCAGTTGTATCAGCGTTCTGGAGATATGGGATTAGGAGTACCCTTCAACATTGCCAGC 39524730 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || | ||||| || | |||||||| || ||||| Sbjct 39524731 TACTCACTGCTAACTTCAATGATTGCTCATGTTAC 39524765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 43686 AAAATCCGTCTA-GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 ||||||| || | |||||||| | || ||||| || |||| ||| || ||| |||||||| Sbjct 14013691 AAAATCC-TCGACGGTTTGTCATCTTCCCAATCCACTATCCTGATATCTGGAAAATGTAC 14013749 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 || ||||| || || || || |||||||||||||| || Sbjct 14013750 AAGAAAGCTCAAGCTTCTTTCTGGACAGCAGAAGAGGT 14013787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397424722324285