Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3801 111 1e-19 seq8 84.2 2e-11 >seq3801 Length=8881 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || || || | || || ||||| || || ||||||||| Sbjct 4357 TGCCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 4416 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| |||||||| ||||| |||| | | |||||| || |||| Sbjct 4417 ACAGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCG 4476 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||| || ||||| | || | ||||| | | ||| | Sbjct 4477 GGATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCA 4536 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| || | ||| || ||||| || ||||||||||||||||| Sbjct 4537 CTTCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| || | || | || || ||||| || || || || || Sbjct 5041 TGCCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTG 5100 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| || || || |||||| |||| | | ||| || || || | Sbjct 5101 ACAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGG 5160 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| || | | |||| | |||||| ||| ||| | Sbjct 5161 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCA 5220 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | |||||||| || | |||||| ||||| || ||||||||||| ||||| Sbjct 5221 CCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | | ||||| || || || | || || ||||| || |||||||||||| Sbjct 4813 TGCCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGG 4872 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | ||||| ||||| || |||||| |||| | | || ||||| || | Sbjct 4873 AGAGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGG 4932 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || ||||||| || | | |||| | ||||| | | ||| | Sbjct 4933 GGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCA 4992 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || | |||||||||| ||||| ||||| || ||||| Sbjct 4993 CCTCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||| | ||| | || || ||||| || |||||||||||| Sbjct 3903 CCTCCCCGGAGACGAAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAG 3962 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||| || |||||| |||| | | ||| || || || || Sbjct 3963 AGAGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGA 4022 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||| ||| || | | | || | ||||| | | || ||| Sbjct 4023 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACT 4082 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || |||| ||||| |||||||| ||||| Sbjct 4083 TCGAGAGTGATGGTTTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| || | || | || || ||||| || || ||||||||| Sbjct 5499 CCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 5558 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| |||||||| |||||| | || | | ||| || || || || Sbjct 5559 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5618 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || ||||||| || | | || | ||||| | | || || Sbjct 5619 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACC 5678 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || | ||||| |||| || ||||||||||| ||||| Sbjct 5679 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5725 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || ||||||||||| | | | || | ||||| ||||| || ||| Sbjct 4617 GTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCATCTTCAAGCTGCTTCCCG 4676 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||| | || ||||| || || | || ||||| || ||| || || Sbjct 4677 GCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTG 4736 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| |||||||| ||||| || | ||| || |||| || Sbjct 4737 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATGGTTTTTCCAGTCAAGGTC 4796 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 4797 TTCACGAAAATCTGCAT 4813 >seq8 Length=3271537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || ||||| |||| || || || || || || || ||||||||||| Sbjct 1336509 TGCCACCCCTCAGTCGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAG 1336450 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||| ||||| || ||||| | ||||| | ||| || || |||| Sbjct 1336449 AAAGAGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCG 1336390 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || ||||||| |||| | || | ||||| ||| || | Sbjct 1336389 GGATGCCTTCTTTCTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 1336330 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || ||||| || |||||||| | ||||| Sbjct 1336329 CCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCAT 1336281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424900959920184