Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3801 140 1e-27 seq11 123 8e-23 seq7 102 2e-16 seq2394 100 9e-16 seq14 96.9 1e-14 >seq3801 Length=8881 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| || || || || || |||||||| || | || || |||||| Sbjct 4146 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATCT 4205 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || || || || | | ||||||||| ||||| || || ||||| || Sbjct 4206 TCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTCT 4265 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || ||||| ||||| | ||| |||||| ||||| || || | ||| Sbjct 4266 TGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGTC 4325 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 4326 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 140523 CTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCA 140582 || || ||||| || || || |||||||| || ||||| || || || | || || ||| Sbjct 4599 CTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCA 4658 Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642 |||||||| || || || || || || || | ||||||||| ||||| || |||||||| Sbjct 4659 TCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTG 4718 Query 140643 TCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACT 140702 || || ||||| || || || || ||||| | ||| || |||||||| || || | Sbjct 4719 TCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATG 4778 Query 140703 GTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | || || || ||||||||||| Sbjct 4779 GTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 4813 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| ||||| |||||||| || || || ||||| || | || || |||||| Sbjct 5286 AGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCT 5345 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| ||||| || || ||||| | | ||||| || || || || |||||||| || Sbjct 5346 TCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCT 5405 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | || ||||||||| || || || | ||| Sbjct 5406 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTC 5465 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || ||||||||||| Sbjct 5466 TTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| ||||| || ||||| || ||||| || || || | || || |||||| Sbjct 3918 AGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCT 3977 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || || || || | | ||||| || |||||||| |||||||| || Sbjct 3978 TCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 4037 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || || || ||||| | ||| || || ||||| || || | || Sbjct 4038 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTT 4097 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| ||||| |||||||| Sbjct 4098 TTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 125 bits (138), Expect = 2e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || | || | || ||||| |||||||| |||||||| || || || || || Sbjct 5495 CATACCTCCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTC 5554 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| ||||| || || ||||| | | ||||| || || Sbjct 5555 GGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGG 5614 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| || || || || || || ||||| ||||| | ||| ||| || Sbjct 5615 GGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTC 5674 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || | || || ||||| ||||||||| Sbjct 5675 CACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 5726 Score = 123 bits (136), Expect = 8e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || || || ||||| || ||||| || || || | || || ||||||||||| || Sbjct 4839 TGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATCTTCAAGCTGC 4898 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || || || | | ||||||||| || || || |||||||| || || || || Sbjct 4899 TTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTG 4958 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || ||||| | ||| |||||| || || ||||| | ||||| || || Sbjct 4959 GCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGTCTTGCCCGTC 5018 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | ||||| |||||||||||||| Sbjct 5019 AAGGTTTTGACAAAAATCTGCAT 5041 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || |||||||| || || |||||||| || | || || |||||| Sbjct 5058 AGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATCT 5117 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 |||||||| || || || || || | | ||||| || || || || || ||||| || Sbjct 5118 TCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5177 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| ||||| || || || |||| || Sbjct 5178 TGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGTT 5237 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 5238 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || || || | | ||| || | || ||||| || ||||| || || || || || Sbjct 4355 CATGCCTCCCCGGAGACGTAGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTC 4414 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| ||||| || ||||| || | | || || || || Sbjct 4415 GGACAGAGTACGGCCATCTTCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGG 4474 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| || || ||||| ||||| ||||| ||||| | || |||||| Sbjct 4475 CGGGATGCCCTCTTTGTCTTGGATTTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTC 4534 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | || ||||| || || || || ||||| || ||||| Sbjct 4535 CACTTCGAGAGTGATGGTTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || || || | || || |||||| Sbjct 3690 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCT 3749 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| || || || || ||||| || || Sbjct 3750 TCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 3809 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || || || ||||| | || || || ||||| || || | ||| Sbjct 3810 TGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGTC 3869 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || |||||||||||||| Sbjct 3870 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 >seq11 Length=4257874 Score = 123 bits (136), Expect = 8e-23 Identities = 360/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 349766 AATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| | || || ||||| | || ||||| || |||||||| || | || || ||||| Sbjct 919647 AATGTCCTCATCTTTGACCTGGGCGGTGGCACCTTTGATGTGTCCATCCTGACCATTGAA 919706 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 || || || ||||| ||||| |||| ||||| || || || | || || || |||||| Sbjct 919707 GATGGCATCTTTGAGGTTAAGTCAACCGCTGGAGACACTCACTTGGGAGGCGAGGATTTT 919766 Query 349886 GATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATAT 349944 ||||| || | || || ||||| ||| |||||||| ||||| || | || || Sbjct 919767 GATAACCGCATGGTGAACCACTTTGTGTCAGAGTTTAAGCG-CAAGCACAAGAAGGACAT 919825 Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004 ||| || | || | || ||||| | || |||||||| || || ||||| | Sbjct 919826 CACAGACAACAAGCGGGCGGTCCGGCGCCTGCGCACGGCGTGTGAGCGGGCCAAGCGCAC 919885 Query 350005 CTTATCATCTACT--ACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGAT 350062 | ||| || || ||||| |||| || || || || || || || |||| || Sbjct 919886 C--CTCAGCTCCTCCACCCAGGCCTCCATCGAGATAGACTCCCTCTACGAGGGCATTGAC 919943 Query 350063 TTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAG 350120 |||| | || || || || || || ||||||||| || ||| || ||||| | | Sbjct 919944 TTCTACACCTCCATCACCCGAGCCCGCTTTGAAGAA--CTGAATGCCGACCTTTTCCGGG 920001 Query 350121 CAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTG 350180 || |||| ||||| || |||| ||| ||||| || || |||| ||| | Sbjct 920002 GCACCTTGGAGCCTGTAGAGAAAGCCTTACGCGATGCCAAGCTGGACAAATCCCAGGTGC 920061 Query 350181 ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTG 350240 | || | || | || || || || || |||||||| || | ||| || | || | Sbjct 920062 ACGACATTGTGCTCGTGGGGGGCTCAACCCGTATTCCCAAGATCCAAAAGCTTCTGCAGG 920121 Query 350241 AGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATAT 350299 | || || || |||| ||| | | | ||| | || || || |||||||| || || || Sbjct 920122 ACTTCTTCAACGGCAGAGAGCTCAACAAGAGC-ATCAACCCTGATGAAGCGGTGGCTTAC 920180 Query 350300 GGTGC 350304 || || Sbjct 920181 GGAGC 920185 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || || || || ||||| || || || ||| ||||| | || || || |||| Sbjct 918294 ATGCAGTCATCACAGTCCCAGCTTACTTCAACGATTCCCAGAGACAGGCTACCAAGGATG 918353 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| || | ||||| || | || || ||||||||||| ||||| || | Sbjct 918354 CTGGTACCATTGCAGGCCTCAATGTCCTTCGCATCATCAATGAACCCACAGCTGCTGCCA 918413 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || |||||||| ||||||| Sbjct 918414 TAGCCTATGGGCTGGATAAAA 918434 >seq7 Length=7025928 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | || || |||||||| || ||||| ||||||| || |||||||||| Sbjct 3023699 ATGCTGTGGTCACAGTCCCAGCCTACTTCAATGACTCCCAGCGCCAGGCTACAAAAGATG 3023640 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || | |||||| || | ||||| || | || ||||| ||||| |||||||| || | Sbjct 3023639 CGGGAACCATTGCTGGTCTCAATGTGCTCCGGATCATTAACGAACCAACTGCTGCTGCTA 3023580 Query 349728 TTGCATATGGGCTTGATAAAA 349748 |||| ||||| | ||||||| Sbjct 3023579 TTGCTTATGGCTTAGATAAAA 3023559 >seq2394 Length=14861 Score = 100 bits (110), Expect = 9e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660 || ||| |||||||| | ||||| ||||| || || |||||||||||||| || ||| Sbjct 9540 GTTACTCATGCTGTTGTGACTGTGCCAGCTTACTTCAATGATGCCCAGCGCCAAGCCACA 9481 Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || |||||||| | |||||| || || |||||| | ||||| || |||||||| Sbjct 9480 AAGGATGCTGGGACCATTGCCGGATTGAATGTTATGAGAATCATCAATGAACC 9428 >seq14 Length=14352415 Score = 96.9 bits (106), Expect = 1e-14 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || |||||||| | || || || || || | || ||||||| || | Sbjct 9651897 CAAG-TGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATCCTCCA 9651955 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||||||| | ||||| || ||||| || |||||||| ||||| | Sbjct 9651956 GCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTCCTGGA 9652015 Query 140650 TTTTAGCTTTTACATTATCA 140669 |||| || || ||||| ||| Sbjct 9652016 TTTTGGCCTTGACATTCTCA 9652035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515129042529971