Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq514 96.9 4e-15 seq4 84.2 2e-11 >seq514 Length=269024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 19250 TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTC 19309 || ||||||||||| || |||||||| |||||||| || ||||||||||| || ||| Sbjct 173115 TCCAGCTGTTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACACTC 173174 Query 19310 AAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||| | || |||| ||||||||||| | |||| || ||||| Sbjct 173175 AAGCACTGTGCGCTCATCTCCAAGTCGGCCGGAGGGATCGG 173215 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 |||||||||| || | ||||| ||||||||||||| ||| |||| ||| |||||| || Sbjct 181407 ACTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCA 181348 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246 ||||||| || ||||||||| ||| || || | | ||| ||||| | | ||||| Sbjct 181347 TGTACGGAGTGCCGGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCT 181288 Query 79247 GGACAAC 79253 ||| || Sbjct 181287 TGACCAC 181281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| || |||| | ||||||||||| |||| || | |||||| || ||||||||||| Sbjct 173215 CCGATCCCTCCGGCCGACTTGGAGATGAGCGCACAGTGCTTGAGTGTGTCGTAGATGCCT 173156 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA 79754 ||||| |||||||||||| | |||||| ||||| || Sbjct 173155 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAACAGCTGGA 173115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 78221 CCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTC-TCCATG 78279 ||| |||||||||||| | |||||| || | |||||| ||| | | ||| || | ||| Sbjct 193484 CCTGCTTCCATCCGTAGAAGTGCATGCTGGTCAGCTT-GCCGTAGTTGGGCTCAGCAATG 193426 Query 78280 AAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATG 78339 |||||| || |||||| |||||| ||| | || || ||||| || ||||| | | Sbjct 193425 TGGATGTTCAGGGACTGGCTCTGGTCAATGAAGGCCCCTCGGTCCGCAGCCATCTTCAGC 193366 Query 78340 ACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATG 78399 |||| ||| || | |||||||| | ||| ||| | |||||| || ||| |||| Sbjct 193365 ACCGTCTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCAGCTTCAGGTCGTCCGGGATT 193306 Query 78400 TC 78401 || Sbjct 193305 TC 193304 >seq4 Length=156502444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| | || |||||||||||||||||||| | || ||||| || |||||| Sbjct 14021119 GCTTTTGCCTCGGTTGAAGGAATCTTCTTCTCTGGTGCCTTTGCAGCTATCTTTTGGCTC 14021178 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || || | || || |||||||| || | ||||||||| || || ||| ||| || || Sbjct 14021179 AAGAAAAGAGGACTGATGCCGGGTCTCACTTTCTCCAATGAACTTATTAGCCGTGATGA 14021237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548480527192080